Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00033 ATGTCGGGCGACAATGGCAGCCAGCAGAGGAAGAAGAGGCTTGCCATTATGGGGGTCTCTTCGGTCCTTCTGGTAGCAATGGTAGCTGCTGTCGCCGTCGGCAATAGTAATTCAGGAAAAGACTCCCAGAACGGCACTACTGAGATTTCAACATCTCAGAGGAACGTCGACACGCTTTGCCTCTCCGCACAATACAAAGATACCTGCAAGAAGAGCGTGGAGGGCGTAGCGTCCGGCAATAACACCGACATGAAATCCCTCATCAAGGCCGCCTTTAACTCCACGGCGGAAGAGATCACCAATCAAATGAGGAACTCCACACTGTTCAGAGAGCTGGAGAAGGACCCCAGCACAAAAGACGCTTTGGACGTGTGCAAGGAGGTGTTTGGTTACGCGTTGAAGAGCATCAATGACTCCATCGATAAGGTGGACAAGTTTGAACTGAGCAGTCTGGGCGAATTCGCCTACGACCTCAAGGTTTGGCTGTCAGGAGCCATAACCATGCAGCACACCTGCCTGGATGGTTTTCATAACTCCACCACCAAGGCTGGGCAGACCATGGCCAGTGCACTGAAAACGGCCTTGGAGATGAGTAACAACGCGCTTGACATAGTGGAAGGCTTCTCCAGCGTCCTAGAGGATTTCAACCTGGACGACCCTCTCGATGACGTTGAAAACACGGAGGCCGCCAAAAACAATAGCAGGAAGCTGCTGACGACTGCCTCCTCCAAGGCGGAAGCCGTGGCGGCGAATGACATACCAACGTGGGTGGGCAGCCACCAGAGAAGGCTGTTGCAGGTGGGAAAAAAGGCATTGAAGGCAGACGCTGTGGTTGCTCAGGACGGGACTGGCCAGTTCAAGACATTGACGGATGCACTCAAGACAGTTCCCCCAAACAACAACAAGCCCTTTGTCATCCACGTCAAGGCTGGGGTATACAAGGAGGAAGTAACCATTGCCGCAAACACCATGAACTTTGTGACCATCGTCGGAGATGGGGCAACAAAAACCAGGTTCACCGGAGGCAAATCCCAAAAGGATGGGTTCCAAACTTTCCACACCTCATCATTCTCGGTGAATGCCAATAACTTCATGGCAGTAGACGTAGGGTTCGAGAACACGGCAGGACCTAGCGCGGGGCCGGCGGTGGCGCTGAGGATAACCGGAGACAAGGCAGTAGTATACAGATGCTACGTGGACGGACACCAGGACACACTGTATCCGAGCGCCTACAGGCAGTTCTACAGGGACTGCATGGTGTGGGGGACCATCGACTTCATATTCGGGGATGCGGTAACAGTATTCCAGAACTGCACAATAATGGTGAGGAAAGGTGTGGATGGGCAGGAAGGCGTGGTGGCGGCCGGCGGGAAAAACCAGCAGGCAGGTCCCAGTGCTCTGGTGTTCCAGGGCTGCAAATTCCTTCCGGACCCATCCTACATGGATACAGCCGCCGTGAAGAACGGGTTGCAGATATCGTATCTGGCGAGGCCATGGAAGCCGTACGCAAAGACGGTGATCATAGAGTCGTACATCCATGAAATCTTCAACCCAAAAGGGTACATTCCGTTTACAGGATCCAACTTCGAGAATACTTGCACTGCTCTGGAGTTCGGCAACGTGGGTCCAGGCGGTAACGGTTCGCAGAGGGTGAAATGGCCCGGTGTGAACGCAAATCTGCCTCGGAACCAGGCTGCTCAATATTATCCCGGCAAATACTTCCGGGCTTCAAATAACGAAGGCGATGCGTGGATTGTTTCCTCCGGGGTCCCCTACTCAAGCGGCCCCATGCTAGCCTCTCCCTAG 1806 0.5393 MSGDNGSQQRKKRLAIMGVSSVLLVAMVAAVAVGNSNSGKDSQNGTTEISTSQRNVDTLCLSAQYKDTCKKSVEGVASGNNTDMKSLIKAAFNSTAEEITNQMRNSTLFRELEKDPSTKDALDVCKEVFGYALKSINDSIDKVDKFELSSLGEFAYDLKVWLSGAITMQHTCLDGFHNSTTKAGQTMASALKTALEMSNNALDIVEGFSSVLEDFNLDDPLDDVENTEAAKNNSRKLLTTASSKAEAVAANDIPTWVGSHQRRLLQVGKKALKADAVVAQDGTGQFKTLTDALKTVPPNNNKPFVIHVKAGVYKEEVTIAANTMNFVTIVGDGATKTRFTGGKSQKDGFQTFHTSSFSVNANNFMAVDVGFENTAGPSAGPAVALRITGDKAVVYRCYVDGHQDTLYPSAYRQFYRDCMVWGTIDFIFGDAVTVFQNCTIMVRKGVDGQEGVVAAGGKNQQAGPSALVFQGCKFLPDPSYMDTAAVKNGLQISYLARPWKPYAKTVIIESYIHEIFNPKGYIPFTGSNFENTCTALEFGNVGPGGNGSQRVKWPGVNANLPRNQAAQYYPGKYFRASNNEGDAWIVSSGVPYSSGPMLASP 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00033 601 ProSitePatterns Pectinesterase signature 1. 300 319 IPR018040 -
Pral1576g00033 601 Pfam Pectinesterase 275 575 IPR000070 GO:0030599|GO:0042545
Pral1576g00033 601 SUPERFAMILY Pectin lyase-like 272 594 IPR011050 -
Pral1576g00033 601 NCBIfam pectinesterase inhibitor domain 50 205 IPR006501 GO:0004857
Pral1576g00033 601 FunFam Pectinesterase 52 209 - -
Pral1576g00033 601 CDD PMEI-like_3 58 210 - -
Pral1576g00033 601 SMART PMEI_2 51 204 IPR006501 GO:0004857
Pral1576g00033 601 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Pral1576g00033 601 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 208 IPR035513 -
Pral1576g00033 601 FunFam Pectinesterase 4 272 596 - -
Pral1576g00033 601 PANTHER PECTINESTERASE 21 585 - -
Pral1576g00033 601 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Pral1576g00033 601 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 208 IPR035513 -
Pral1576g00033 601 Gene3D - 272 597 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00033 Pral-Chr1576 170845 172753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00033 3 601 Carbohydrate Esterase AT3G05610 38.972 2.60e-148 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00033 K01051 - gmx:100784682 577.785