Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00032 ATGATGGGCAGCGGGGACCCCAATTTCAGTGAAGAAGATGCCAAGAGCTACGCTCTCACCGGCAGGATTATGCTTGGCGCCATCGTGATTTTATTCTTCATCGTCATCCTAATGGTTTGCCTGCACCTATATGTTCGCTGGTTTCACGTACAAGCTCGCCGCCGTCATCCCCTCCGCCGCCGCCGGCGCTCTCAAATCGTATTCTTTGTGGACTCCGCTGCTACTCCTGTCGTGGCCTCTTCGCGCGGTCTTGATTCGTCTCTACTCACATCTCTTCCCGTCTTTATCTACTCTTCTAAGACCCACACCGAGCAGGTTGAATGCCCGGTTTGCTTGTCCGAATTCGAAGAGGGCGAATCAGGCCGAGTCTTACCCAAATGCAATCACAGTTTCCACGTTGATTGCGTCGACATGTGGTTCAAGACGCACTCCACTTGCCCAGTTTGCAGGGCTGCTGTTGAACCCACGCCGACGGATGCCAACGGGCCTGAAGTGGTGATCACTGTGAGCGAACAGGAAGTTTCTGAAGCAGGGTCGACCTCTGGACTGTGCTCGGAGTGTCAGCCCGAGGGAAGGGATGAAGCCCGGAGCGGGCACACGGTTTGTTCTTCGTCGTCTTGGATTGGGTTAGAGGGTAAGCCATCGTCACTAGTGGGTGTGACCTTGGAGGTGCCCAAGAGGAGCGAGAGCTTTGGAGACGAGTCGGCTTACGATTCGCCGTCGAGTCAGTCATCGTTCAGGTCGCCAATGAGTCGCATGCGGTCGTTCAAGAGGATGCTTAGTAGAGACTGGAAAGCAAGCCTTTCGCCATCGGCAGGGACTAGTACTGCGAAGGGCAGCGGCTTTGGGAATGAGTTTGAGAAGAATGGAGGAGGAGGACGAGAGGAGACGCAATGA 897 0.5507 MMGSGDPNFSEEDAKSYALTGRIMLGAIVILFFIVILMVCLHLYVRWFHVQARRRHPLRRRRRSQIVFFVDSAATPVVASSRGLDSSLLTSLPVFIYSSKTHTEQVECPVCLSEFEEGESGRVLPKCNHSFHVDCVDMWFKTHSTCPVCRAAVEPTPTDANGPEVVITVSEQEVSEAGSTSGLCSECQPEGRDEARSGHTVCSSSSWIGLEGKPSSLVGVTLEVPKRSESFGDESAYDSPSSQSSFRSPMSRMRSFKRMLSRDWKASLSPSAGTSTAKGSGFGNEFEKNGGGGREETQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00032 298 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Pral1576g00032 298 SMART ring_2 108 149 IPR001841 -
Pral1576g00032 298 MobiDBLite consensus disorder prediction 230 298 - -
Pral1576g00032 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 156 IPR013083 -
Pral1576g00032 298 FunFam RING-H2 finger protein ATL3 75 155 - -
Pral1576g00032 298 CDD RING-H2_EL5-like 107 150 - -
Pral1576g00032 298 MobiDBLite consensus disorder prediction 267 282 - -
Pral1576g00032 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 205 - -
Pral1576g00032 298 Pfam Ring finger domain 107 150 IPR001841 -
Pral1576g00032 298 MobiDBLite consensus disorder prediction 234 251 - -
Pral1576g00032 298 SUPERFAMILY RING/U-box 88 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00032 Pral-Chr1576 166487 168062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00032 6 273 Rapid Response to Elicitors AT3G16720 52.632 2.95e-71 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00032 - - pcin:129320593 414.846