Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1576g00020 ATGCCTTCTCCTTCATGGCTCACAAGCCTTACTTGTTCATCTTCCTCCATGGAATTCTCTTCCTCTTCACAACTCTTACATTGGTTCTCCTTCATCCTCCTATCTCCATGTCCTCAACGAGTGTTGTTTTCCTCGGTTGATCTCTTCTTCTTGCTGATTCTTTTAGTCTTCTCCCTTCGGAAATTCTGTTATCGACCCACTTCTTCTGCTGACACCAGCTCATCCATAGCTAGACCCCTTCTGTTTGAAAAGGACTTAAACCACAAAGTTACTTCCTTTTTCCATTTTCCTCTTTTTCTAATCATTCTGTTGGCAATTGCTTACGTGGTCTTAAGCGTCTTAACCTTCACTCACACCTCTCAGACTTCATGGAAACTGATCGAAGCTCTGTTCCGGGGTTCTCAAGCAATAACCAACGTAGTGGTTGTCCTTGTGATGGTGAAAGAGAAGAAGGTTAAAGATACTAAACACCCTTTGTCACTCAGAATCTACTGGGCAGCAAATTTTGTTATTTCTTGCTTATTCGTTGCTTCGGCCATTTATCGATTGGCAAACATCGGTGCAGCAAACTTGGAGTTCAATTTGAAAATTGACGATATACTCTCGATTGTAAGTCTTCCCTTGGCTGTTTATCTATCAATAGTAGCTGTTAAAGGGTCATCGGGGATTCATGTAGTCAAAAGACCAGATTTTGATTCGAGGTCAGCAGAACCATTGTGCCAGAGGCTTCTAACGGAAGAGAATTTGAGTCCTTACGCTTATGCTTCCTTGTTCTCCAAAATGGTGTGGCTGTGGATGAACCCTCTGCTCCAAAAAGGCTACAAGTCACCTCTTAAACTTGATGATGTGCCTTCACTTCCTCCTGAGTTTCGAGCTGAAAAAATGTCAGAGCTTTTTGCGACGAATTGGCCGAAGCCAGAGGAAAGTTGCAAACATCCAGTAGGTATCACACTAGTCAGATGCTTTTGGAAACAAGTAGTTTTCACTGGCGGTCTGGCTGTCATTCGACTTGCGGTTTCCTTTGTGGGGCCAGTGCTTATTCAAAAATTTGTTGATTACACCTCATTGAAAGGAAGCCCTGCCTCCCATGGACTTGGTTTGGTATTGATCCTGCTTCTGGCTAAATCAGTTGAAGTCCTCAGTACCCACCAGTTCAATTTTCACTCTCAGAAACTGGGTATGCTAATTCGTTCCAGCCTCATCACTTCTTTATACAAAAAAGGCTTGAGATTGTCAAGCTCTGCGAGGCAGGCTCATGGGGCTGGACAGATTGTGAATTACATGGCTGTGGATGCTCAGCAGTTAACTGATATGATGTCGCAGCTGCATTGTATTTGGTTGACGCCTTTACAAATTGCAGCTGCTTTGGTTTTGATCTACTGCTATCTTGGCTTGTCCACATTTGCGGCCATGCTTGGGACCATTGCAATGTTTGCTTACGTACTACTGGGTTCAAAAAGGAACAATACTTTCTCGTACAGTATAATGGTGAATCGTGATTCCAGGATGAAGGCCATGACTAATATGCTTAATAATGTGCGTGTCATCAAGTTCCAAGCATGGGAGGAGCATTTTGGCAGCAAGATACGAAATTTTCGTGAGTTGGAGTATCATTGGATTGGGAAGTTCATGTATGCTTTTGCTACCAACATTGGGGTTCTCTGGGTTTCTCCTACTATGATAGCAGTTCTTACCTTTGGAGCAGCAATTCTTCTGGGATTTCATCTTGATGCTGGCACTGTGTTTACAGTAATGTCAGTGATCAAAATACTGCAAGAACCAGTTAGGATGTTCCCTCAAGCTCTTGTTTCCATCTCACAAGCAATCGTCTCCCTTGGGAGGTTGGATGAGTACATTAAAAGTGGGGAGTTGGATGAAAGTTCGGTAGAGAGAGTAGAAGACAATAACAGTAACGTAGCTGTGGAAATAAAAGAAGGGTCTTTCTCATGGGATGATGAAGGAGAGAAGGTGGCTCTGGAAGTTTCAGAGCTGGAAATAAAGAATGGGGCTCTCGCTGCAGTTGTTGGAACTGTTGGATCAGGAAAGTCTTCACTATTGGCTTCGGTGTTAGGGGAAATGCACAAGATCTCAGGACAGGTCAGAGTAGGTGGGAAAACAGCTTATGTAGCACAGACTGCGTGGATCCGGAATGCGACGATTGAAGAGAACATATTGTTTGAATTACCGATGGATAGGGAGAAATACCGGGAAACCATCAGAGTGTGTTGCCTGGAAAAGGATCTTGAGATGTTAGAACATGGAGACCAGACTGAGATTGGAGAAAGGGGTATAAACCTCAGCGGTGGCCAAAAGCAACGCGTACAACTTGCTAGAGCTGTGTATCAGGACTGTGACATCTATCTCCTTGACGATATATTTAGTGCCGTTGATGCTCAAACTGGAACCTTTATCTTTAAGGAATGTGTTATGGGAGCTCTCAAGGACAAGGCAATTATCCTTGTAACCCACCAAGTTGACTTCTTGCATAATGTGGACCTCATAGCAGTCATGCGAGATGGGAAGATCGTGCAACGCGGAAAGTACAAAGAACTTCTGGAATCTGGCCTGGATTTTGGCGCACTTGTGGCTGCTCACGAAGCCTCTATGGAACTTGTAGAAAGGACTGACACATCTGGTTGCGCTTCTGGTCCACCTTCAAAACAAGGGGAAAGCAGTGAGAAAATAAACTCCCAAGAGGAAGACAAGTCTGATTCTGATAAGGGAACATCAAAGCTCATTGAAGATGAGGAGAAAGAAACCGGCCGAGTCAATTTCCAAGTATACAAACAATATTGCACCGAAGCATATGGATGGTGGGGAGTAGCAGTAGTCCTGCTAATGACTCTAATTTGGACTGCAGCTATGATGGCTGGAGACTACTGGCTGGCATTTGAAACTTCAAAAGATCGCTCCTTTAATCCCACTCTATTCATTGGCGTGTACGCCGGTATTGGAGTTATTTCATGCATAATGGTCATAATCAGATCGTACGTAGTAACACATTGGGGTCTAAAGACAGCTCAGAGCTTCTTCACTGGAATGCTTCAAAGTATTCTCCACGCACCAATGTCATTCTTTGATACCACTCCTTCTGGCAGAATTCTTAGTCGTATGTCTGCGGATCAACTCTTTATCGATATAGTAATTCCGATGTTCATCGGCATGGTCATGATGACGTACCTCTCATTACTTAGCATCTTCTTCGTCACTTGCCAAAATGCTTGGGAGATTGTCTTCCTTATTCTTCCATTGATTTGGCTCAACAACTGGTACCGGAAATATTACCTTGCATCTTCTCGGGAATTGACTCGGCTTGATTCTATTGCAAAAGCTCCTGTGATTCATCAATTTTCAGAGACCATTTCTGGTGTCATGACAATCCGTGGCTTTAGGAAACAAGGCGCATTTTGTGAGGAAAATATAAATAGGGTGAATGCAAACTTGAGGATGGAATTCCACAACAATGGATCATATGAATGGCTTGCTTTCCGCTTAGACCTGCTTGGAGTGGTTTTCCTTTGCATTGCCACAATGCTTATGATCTTTTTGCCAAGTGCTATCATGAAGCCAGAATATGTTGGTTTGTCTCTATCCTATGGCCTGACTCTGAGTGGTGTTATGGCAATTTCCGTAACTTTGACTTGCCAAGTTGAGAACAAAATGGTTTCAGTCGAAAGAATAAAGCAGTTCTCCAATATTACACCAGAATCTCCATGGAGAATCCCTGATGGCCTTCCACCGCACAATTGGCCCACTCATGGCTGCATCAAGTTACAGGATTTGCAGGTTCGGTATCGGCCAAATACACCGCTCATTCTGAAGGGAATCACGCTAAGCATTCAAGGAGGAGAGAAGATTGGGATAGTAGGGCGTACTGGGAGTGGGAAATCAACGCTAGTGCAGGTGTTATTCAGACTGGTTGAGCCTTCGTATGGGAAAATAGTGATCGATGGCATCAACATTTGCACCCTGGGACTTCATGATCTCAGGTCTCGCTTTGGTATCATTCCACAAGAGCCTGTTCTCTTTGAAGGAACTGTAAGAAGCAACATAGACCCAAATGAATTGTATTCCGATGAAGAAATCTGGAAGAGCCTCGAGCGGTGCCAACTGAAGGACGTAGTGGCTGCAAAGACCGAGAAACTGGATGCTTCAGTGGTGGATGGCGGAGACAATTGGAGTGTGGGGCAGAGGCAGCTGTTATGTTTGGGAAGGGTAATGCTGAAACGCAGCCAAATACTATTCATGGATGAGGCAACAGCATCAGTTGATTCCCAAACTGATGCTGTAATTCAGAAGATCATCCGGGAGGACTTTAAAAAATGTACCATTCTCAGTGTTGCTCACAGAATACCCACTGTTATGGATTGTGATAGGGTTCTGGTTATAGATGCAGGATATGCAAAGGAATTTGATAGGCCGGAGAGATTGCTGGAAAGGCCCTCACTTTTTGGTGCATTGGTCCAGGAGTACTCTAACAGATCATGTTAG 4491 0.4402 MPSPSWLTSLTCSSSSMEFSSSSQLLHWFSFILLSPCPQRVLFSSVDLFFLLILLVFSLRKFCYRPTSSADTSSSIARPLLFEKDLNHKVTSFFHFPLFLIILLAIAYVVLSVLTFTHTSQTSWKLIEALFRGSQAITNVVVVLVMVKEKKVKDTKHPLSLRIYWAANFVISCLFVASAIYRLANIGAANLEFNLKIDDILSIVSLPLAVYLSIVAVKGSSGIHVVKRPDFDSRSAEPLCQRLLTEENLSPYAYASLFSKMVWLWMNPLLQKGYKSPLKLDDVPSLPPEFRAEKMSELFATNWPKPEESCKHPVGITLVRCFWKQVVFTGGLAVIRLAVSFVGPVLIQKFVDYTSLKGSPASHGLGLVLILLLAKSVEVLSTHQFNFHSQKLGMLIRSSLITSLYKKGLRLSSSARQAHGAGQIVNYMAVDAQQLTDMMSQLHCIWLTPLQIAAALVLIYCYLGLSTFAAMLGTIAMFAYVLLGSKRNNTFSYSIMVNRDSRMKAMTNMLNNVRVIKFQAWEEHFGSKIRNFRELEYHWIGKFMYAFATNIGVLWVSPTMIAVLTFGAAILLGFHLDAGTVFTVMSVIKILQEPVRMFPQALVSISQAIVSLGRLDEYIKSGELDESSVERVEDNNSNVAVEIKEGSFSWDDEGEKVALEVSELEIKNGALAAVVGTVGSGKSSLLASVLGEMHKISGQVRVGGKTAYVAQTAWIRNATIEENILFELPMDREKYRETIRVCCLEKDLEMLEHGDQTEIGERGINLSGGQKQRVQLARAVYQDCDIYLLDDIFSAVDAQTGTFIFKECVMGALKDKAIILVTHQVDFLHNVDLIAVMRDGKIVQRGKYKELLESGLDFGALVAAHEASMELVERTDTSGCASGPPSKQGESSEKINSQEEDKSDSDKGTSKLIEDEEKETGRVNFQVYKQYCTEAYGWWGVAVVLLMTLIWTAAMMAGDYWLAFETSKDRSFNPTLFIGVYAGIGVISCIMVIIRSYVVTHWGLKTAQSFFTGMLQSILHAPMSFFDTTPSGRILSRMSADQLFIDIVIPMFIGMVMMTYLSLLSIFFVTCQNAWEIVFLILPLIWLNNWYRKYYLASSRELTRLDSIAKAPVIHQFSETISGVMTIRGFRKQGAFCEENINRVNANLRMEFHNNGSYEWLAFRLDLLGVVFLCIATMLMIFLPSAIMKPEYVGLSLSYGLTLSGVMAISVTLTCQVENKMVSVERIKQFSNITPESPWRIPDGLPPHNWPTHGCIKLQDLQVRYRPNTPLILKGITLSIQGGEKIGIVGRTGSGKSTLVQVLFRLVEPSYGKIVIDGINICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPNELYSDEEIWKSLERCQLKDVVAAKTEKLDASVVDGGDNWSVGQRQLLCLGRVMLKRSQILFMDEATASVDSQTDAVIQKIIREDFKKCTILSVAHRIPTVMDCDRVLVIDAGYAKEFDRPERLLERPSLFGALVQEYSNRSC 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1576g00020 1496 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
Pral1576g00020 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1248 1489 IPR027417 -
Pral1576g00020 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 860 IPR027417 -
Pral1576g00020 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 327 607 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1576g00020 1496 Pfam ABC transporter transmembrane region 964 1182 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1576g00020 1496 Pfam ABC transporter transmembrane region 331 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1576g00020 1496 CDD ABCC_MRP_domain2 1254 1474 - -
Pral1576g00020 1496 MobiDBLite consensus disorder prediction 893 910 - -
Pral1576g00020 1496 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 253 1491 - -
Pral1576g00020 1496 FunFam ABC transporter C family member 5 904 1237 - -
Pral1576g00020 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 641 864 IPR003439 GO:0005524
Pral1576g00020 1496 Pfam ABC transporter 663 791 IPR003439 GO:0005524
Pral1576g00020 1496 SMART AAA_5 668 849 IPR003593 GO:0016887
Pral1576g00020 1496 SMART AAA_5 1282 1466 IPR003593 GO:0016887
Pral1576g00020 1496 SUPERFAMILY ABC transporter transmembrane region 318 623 IPR036640 GO:0005524|GO:0016020
Pral1576g00020 1496 Pfam ABC transporter 1273 1421 IPR003439 GO:0005524
Pral1576g00020 1496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 942 1219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1576g00020 1496 Gene3D - 635 867 IPR027417 -
Pral1576g00020 1496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1256 1490 IPR003439 GO:0005524
Pral1576g00020 1496 CDD ABC_6TM_ABCC_D2 941 1231 IPR044726 GO:0140359
Pral1576g00020 1496 Gene3D - 1243 1488 IPR027417 -
Pral1576g00020 1496 MobiDBLite consensus disorder prediction 874 910 - -
Pral1576g00020 1496 FunFam ABC transporter C family member 10 311 623 - -
Pral1576g00020 1496 FunFam ABC transporter C family member 5 626 873 - -
Pral1576g00020 1496 FunFam ABC transporter C family member 3 1239 1490 - -
Pral1576g00020 1496 CDD ABC_6TM_ABCC_D1 328 615 IPR044746 GO:0140359
Pral1576g00020 1496 Gene3D ABC transporter type 1, transmembrane domain 904 1237 IPR036640 GO:0005524|GO:0016020
Pral1576g00020 1496 Gene3D ABC transporter type 1, transmembrane domain 316 623 IPR036640 GO:0005524|GO:0016020
Pral1576g00020 1496 SUPERFAMILY ABC transporter transmembrane region 938 1242 IPR036640 GO:0005524|GO:0016020
Pral1576g00020 1496 CDD ABCC_MRP_domain1 641 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1576g00020 Pral-Chr1576 99556 106198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1576g00020 588 890 Calmodulin-binding Proteins AT2G36910 28.443 2.87e-24 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1576g00020 - K05665 gmx:100780167 2039.62