Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1575g00005 ATGTGGATCTTTATTCGACCTTTTAGTTGGGATCTGTGGCTGTCCATCGCCATCGTCTGTGTTTTCGTCGGAGGTATCATACTATTCATGGAAAGGAATGTTAAGGAAGATTCAGGACTTGAAAATTCGCCATTTAAGAAGCAACTAAGTGGGGTTTCTATTCTATGGTTTCCTGTAGTACAAGCAGTTCTTCCTGAAAAAGAATCATTGGCCAAGAACTGCTCTAGGTTTGTGCTTGTGTTGTGGTTGATATTAGCATTTGTGCTAATGCAAAGCTACACAGCATGCTTGTCATCAATCTTGACAGTACATCAGCTGCAACCTCGTTACCTAAGTGAGTATGATGTTATTAATGACCCCAACATTAACATTGGATATTATGGGGGCTCTGCCGTCAAAGGCTTGTTGCTGGAGAGATTAAAAGTTCACAAGTCAAGGGTGAAGAAATATTCCACCATGGAACAATATAAGGAGTTCTTAGATAAAGGAAGCCGTAAAGGTGGTGTTGATGCTATTTTTTATGAAGTTCCCTACATCAAAGTGTTCCTCAAAGAATACGGTTCTAATTATGCCATGATTGAAACTAGGCACCGCACTGATGGATTTGGTTTCGCATTCCCCAAAGGCTCCACATTAACTTCACACTTTTCCAGAGCCATATTGAATGTGCGCGAGAGTCCAGAAATGGATGACATTGAGCATAAATATTTTGGAAGCAGTAACAACGATGAAGGCCAAAGCCCATCTAATTCATCGTTAGATGATGCAAGTTCAAGCAGCCTCACTACTTATAGCTTTGCAGGTTTGTTCATGTTAATTGGAGTTTTTTCACTGTCAGCTTTGATAGTCTCTGAAAGTCGTATTTGGCAAAAACCTATTATAGCAGCAAAAATGTATATCCAAAGATTCTTGAGTCGGAGGTTCACAAGAACCAATCCATTAGAGGAAGGTTCTACGACAAGAAGAAATAATGTTGATAGAGAAGAAAATATATCAGAAGACAGAGCAGATGACCAAGGAAAACTGTCTATAGCATCTCTTACATGTGGGGATACCCAAACATTGCCTGTGTAA 1074 0.3976 MWIFIRPFSWDLWLSIAIVCVFVGGIILFMERNVKEDSGLENSPFKKQLSGVSILWFPVVQAVLPEKESLAKNCSRFVLVLWLILAFVLMQSYTACLSSILTVHQLQPRYLSEYDVINDPNINIGYYGGSAVKGLLLERLKVHKSRVKKYSTMEQYKEFLDKGSRKGGVDAIFYEVPYIKVFLKEYGSNYAMIETRHRTDGFGFAFPKGSTLTSHFSRAILNVRESPEMDDIEHKYFGSSNNDEGQSPSNSSLDDASSSSLTTYSFAGLFMLIGVFSLSALIVSESRIWQKPIIAAKMYIQRFLSRRFTRTNPLEEGSTTRRNNVDREENISEDRADDQGKLSIASLTCGDTQTLPV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1575g00005 357 Pfam Ligand-gated ion channel 9 274 IPR001320 GO:0015276|GO:0016020
Pral1575g00005 357 Pfam Bacterial extracellular solute-binding proteins, family 3 144 238 IPR001638 -
Pral1575g00005 357 SMART GluR_14 17 239 IPR001320 GO:0015276|GO:0016020
Pral1575g00005 357 MobiDBLite consensus disorder prediction 320 337 - -
Pral1575g00005 357 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 291 IPR015683 -
Pral1575g00005 357 MobiDBLite consensus disorder prediction 314 337 - -
Pral1575g00005 357 Gene3D - 1 153 - -
Pral1575g00005 357 MobiDBLite consensus disorder prediction 239 254 - -
Pral1575g00005 357 SUPERFAMILY Periplasmic binding protein-like II 1 239 - -
Pral1575g00005 357 MobiDBLite consensus disorder prediction 233 254 - -
Pral1575g00005 357 Gene3D - 188 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1575g00005 Pral-Chr1575 46691 47948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1575g00005 2 283 Ion Channels AT2G29120 38.652 2.60e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1575g00005 K05387 - pcin:129319703 436.417