Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1573g00006 ATGTCATTATTGAGAAATGGTGTGCTTGATGATGACAAAGAACAAAGTGGAAGATGGGAAAATCTGCCTCCAGAATTGCTTTGGGACATAATAAGGAGATTGGAAGAGACTGAGACATGTTGGCCTGAACGTGTTATTCTCTCTTGTGCTTCCGTTTGCAAGTCATGGAGAGCAATCACAAAGGACATTGTTAAGACTCCTGAGCTATCTGGACGACTCATATTTCCCACCTCATTGAAGCAACCAGGGCCACGAGATTCTCCAATCCAATGCTATATTAAAAGGAAGAGAGAAACTTCTATTTATTTGCTGTACTTGGGTTCAGAGCCATCAGAGAATAAGAATGACAAGTTGTTGCTGGCTGCCAAAAGAAAACAAAGGATAAGAAATACAAAATATGTCATATCATTAGTTGCTGATGACTTTCGTCGGACCAGCAAGACATATGTTGGCAAACTCAGGGCTAATTTCTTGGATTACAAGTTCACTATATATGACACTCAACCTCCACATTCCAACAACAACAGTCAATTGAATCATAAATTGTCTCGATGTAAGTACTACAACGTTGGCAGTATTACATACAAGATCAACATGATTCACAAATGCAGAGTTCACAGAACCAAAGGTCCAAGAAAAATGAGCTGTAGCATCATGATGATGATGAAGAACTCTATGACGATGGAACTTAAAAGCAAGGATCCCATATGGGATGAACAATGCCAGCATTGGCACCTCAACTTCAGACATCATGATACCTTGGCATCTGATAATTTCCAGCTCGTTTCTGCTGCTGATGATGAAGAACACGAACATGAACAAGAACAAGAAGAAAAGGTAATCTTGGAATTTGCTAAGATTGGAGAAGACGTGTTTGTTATGGATTACTGTTATCCACTCTCAGCATTTCAAGCTTTTGCCATCTGCCTCAGCAACTTCGATGCTAAACCAACCTGTGATTGA 963 0.3988 MSLLRNGVLDDDKEQSGRWENLPPELLWDIIRRLEETETCWPERVILSCASVCKSWRAITKDIVKTPELSGRLIFPTSLKQPGPRDSPIQCYIKRKRETSIYLLYLGSEPSENKNDKLLLAAKRKQRIRNTKYVISLVADDFRRTSKTYVGKLRANFLDYKFTIYDTQPPHSNNNSQLNHKLSRCKYYNVGSITYKINMIHKCRVHRTKGPRKMSCSIMMMMKNSMTMELKSKDPIWDEQCQHWHLNFRHHDTLASDNFQLVSAADDEEHEHEQEQEEKVILEFAKIGEDVFVMDYCYPLSAFQAFAICLSNFDAKPTCD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1573g00006 320 Pfam Tub family 79 224 IPR000007 -
Pral1573g00006 320 Pfam Tub family 225 314 IPR000007 -
Pral1573g00006 320 Pfam F-box domain 19 65 IPR001810 GO:0005515
Pral1573g00006 320 Gene3D - 12 69 - -
Pral1573g00006 320 PANTHER TUBBY-RELATED 13 316 - -
Pral1573g00006 320 SUPERFAMILY Tubby C-terminal domain-like 67 320 IPR025659 -
Pral1573g00006 320 Gene3D Tubby Protein; Chain A 75 320 IPR025659 -
Pral1573g00006 320 SUPERFAMILY F-box domain 15 62 IPR036047 GO:0005515
Pral1573g00006 320 PRINTS Tubby superfamily signature 149 173 IPR000007 -
Pral1573g00006 320 PRINTS Tubby superfamily signature 277 296 IPR000007 -
Pral1573g00006 320 PRINTS Tubby superfamily signature 230 247 IPR000007 -
Pral1573g00006 320 PRINTS Tubby superfamily signature 298 320 IPR000007 -
Pral1573g00006 320 PRINTS Tubby superfamily signature 133 149 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1573g00006 Pral-Chr1573 56449 58893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1573g00006 19 320 TUB Transcription Factor Family AT2G18280 48.442 1.18e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral1573g00006 Tub 1.5e-35 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1573g00006 K19600 - csv:101205595 319.316