Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1573g00003 ATGGCTTTCACTTCTCGTTTCCAAGATTCTCTTACCAGAACTGCACTTCGAGCCTACCTCGCTGAGTTCATCTCCACTTTCTTCTATGTCTTCGCTGTGATCGGCTCCGGCATGTCTTCCAGGAAGATGAAGGGAGAAGCAGCAACAGAGGCAGCGAATCTGGTGGTGGCAGCCATAGCCAATAGCTTTGCATTGTCCTCTGTGGTGTTCATGGCGTGGGACGTGTCAGGAGGACATGTGAACCCAGCAGTGACCTTCGCAAGGGTGGTTGGAGGCCATATGAACCTATCAACTGCTCTCTTTTATTGGATTTCTCAGATGATTGCTTCTGTCATGGCCTGCCTTCTTCTTAAGATCACCTTCGTTGGAATGCATGTGCCAACGTACACAATAGCACCACAAATGACAGGGTTTGGGGCATCAATTGTGGAAGGTGTCCTAACATTTGCATTAGTGTACACAGTGTATGCTGCTAGGGACCCTAGGCGTAGTGGTCAACTGGGGCCCACAGGTGCCCTAGCCATCGGCTTGATCGTCGGAGCCAATGTCCTAGCCGCTGGTCCGTTCTCCGGCGGGTCGATGAACCCTGCTTGTGCCTTCGGCTCAGCCACTATCGCCGGAACCTTCAAGAATCAAGCAGTGTACTGGGTTGGACCCCTAATTGGTGCTGCCGTTGCTGCTCTTGTTTATGACAGTGTAGGGTATCCCTCTCAGAATGCCGATTCATTTGTAGAAGCAGATAGGGTTTGA 750 0.5133 MAFTSRFQDSLTRTALRAYLAEFISTFFYVFAVIGSGMSSRKMKGEAATEAANLVVAAIANSFALSSVVFMAWDVSGGHVNPAVTFARVVGGHMNLSTALFYWISQMIASVMACLLLKITFVGMHVPTYTIAPQMTGFGASIVEGVLTFALVYTVYAARDPRRSGQLGPTGALAIGLIVGANVLAAGPFSGGSMNPACAFGSATIAGTFKNQAVYWVGPLIGAAVAALVYDSVGYPSQNADSFVEADRV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1573g00003 249 ProSitePatterns MIP family signature. 79 87 IPR022357 -
Pral1573g00003 249 PANTHER AQUAPORIN-8 2 233 IPR034294 -
Pral1573g00003 249 FunFam Probable aquaporin TIP5-1 1 242 - -
Pral1573g00003 249 Pfam Major intrinsic protein 14 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral1573g00003 249 SUPERFAMILY Aquaporin-like 11 237 IPR023271 -
Pral1573g00003 249 PRINTS Major intrinsic protein family signature 98 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral1573g00003 249 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral1573g00003 249 PRINTS Major intrinsic protein family signature 17 36 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral1573g00003 249 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral1573g00003 249 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral1573g00003 249 PRINTS Major intrinsic protein family signature 61 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral1573g00003 249 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1573g00003 Pral-Chr1573 36934 38479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1573g00003 2 248 Major Intrinsic Protein MIP AT3G47440 61.538 7.77e-104 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1573g00003 K09873 - qsa:O6P43_029843 362.459