Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1571g00001 ATGCCTCCTCCTAGTCCTCCTATTCATCACCATGAACAAACCCAACCTAAGCCCAGCCCCAAGCTCCTATCAATCCTCCTTAAAGCCGTCATCATGACCCTTCTCACCTCCGTCTTTTTCATCTTCCTCGGTTTCGCTGCCTTCGTCCTTCTCCATCTCTGCTTCATCGGCGGCATCTTCCACCGCATCCGCTCCCGCCCCACCATCCAACTCGGTGCTTCATCCAATGGAATCGCTCCTCGTGACGTCAAGAAGCTGCCCCACTTCCGGGTTGCTAGCGGAACCGAACCCGGACCCGAAACTCAATGCGTTGTCTGCTTGGATGGCTTCAGGAGCGGCCACTGGTGCAGAAAGCTCGCCGGATGTGGCCATGTGTTCCACCGGAGATGTGTGGATACGTGGTTGGTGAAGGTGGCCGCGTGCCCCACATGCAGGACGCCTGTTCGATCAAATGCAGGGAGCGATGTAGGTTCGGCTCTAGATGTCAATAGAGAGGAGGCTATGCGACATCGAACATCTAGTAGGGGCAGTGCATACAGGATTTTTTACCTTGTAAGTTCGAATATTTTCAATTTCTGTGCTATGTAA 588 0.5357 MPPPSPPIHHHEQTQPKPSPKLLSILLKAVIMTLLTSVFFIFLGFAAFVLLHLCFIGGIFHRIRSRPTIQLGASSNGIAPRDVKKLPHFRVASGTEPGPETQCVVCLDGFRSGHWCRKLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRSNAGSDVGSALDVNREEAMRHRTSSRGSAYRIFYLVSSNIFNFCAM 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1571g00001 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 167 - -
Pral1571g00001 195 Pfam Ring finger domain 102 145 IPR001841 -
Pral1571g00001 195 SMART ring_2 103 144 IPR001841 -
Pral1571g00001 195 SUPERFAMILY RING/U-box 98 150 - -
Pral1571g00001 195 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Pral1571g00001 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1571g00001 Pral-Chr1571 16718 17711 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1571g00001 17 149 C3H Transcription Factor Family AT2G18670 45.522 4.79e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1571g00001 - - gmx:102664895 207.994