Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1569g00003 ATGGACGTGAATAAGTCGCCGCAAATGTCGTCGGGGCCCATCAAGAAGGTGTTAATACACCCTCTGGTTCTTCTAAGCATCGTCGATCACTACAATCGTGTCTCCCAGCAATCGTTTAGGCGGGTCGTCGGAGTCTTGCTCGGCACCTCCTTCCAAGGCATTGTCGATGTTTCCAACAGCTATGCAGTTCCTTTTGAGGAAGAAGTCACGGACCCAAGTGTCTGGTCCCTTAACCACAACTACCATGAGGCAATGCTTTCTATGTTCAAGAAAATAAATGGGACTCTTGGTGGCTATGTTTCAGATAAGGAGCATGTTGTGGGATGGTACAGTACAGGCCCAAAACTTCGAGCAAATGATCTGGACATACATAGATTATTCCACAACTATGTTCCAAATCCGATCTTGGTCATTACTGATGTGCGATCTAGGGAGCCAGGTATCCCAACAAATGCTTACTATGATGTTGAAGAAGGGAAGGAGAATCCTACCCAAAAAAGTCAGAAGGTTTTTGTTCATGTCCCTTCGGAAATTGCTGCTGATGAGGTTGAGGAAATTGGAGTTGGACACTTGTTAAGAGATGTGAAAGATACAACCATCAGTACACTTGCAACTGAGGTTTCTGATAAACTTACAGCCATTAAGGGTTTAGATGCTAGATTAAGAAGGATAAGTTGGTACCTTGGTTTGCTTATTATTGGATGGTATCCATTAAACCATGAGGATGTGGTCAACCACTGTCCGAATCTGAATGTTCCTGAGTTAATCAAGGCCTTTGTAGTAAAATCAAACGACATGATGTGGGTCATATATCTAACCGCTCTCATCCGTTGTGTCATTGCGCTACACAACTTGATAAACAACAAGATTCTGTACAAGGAATACGAGAAAGCTGAAGATGCAAAGCTACTTGCATTTGAGTCATATCATTCTTGA 936 0.4295 MDVNKSPQMSSGPIKKVLIHPLVLLSIVDHYNRVSQQSFRRVVGVLLGTSFQGIVDVSNSYAVPFEEEVTDPSVWSLNHNYHEAMLSMFKKINGTLGGYVSDKEHVVGWYSTGPKLRANDLDIHRLFHNYVPNPILVITDVRSREPGIPTNAYYDVEEGKENPTQKSQKVFVHVPSEIAADEVEEIGVGHLLRDVKDTTISTLATEVSDKLTAIKGLDARLRRISWYLGLLIIGWYPLNHEDVVNHCPNLNVPELIKAFVVKSNDMMWVIYLTALIRCVIALHNLINNKILYKEYEKAEDAKLLAFESYHS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1569g00003 311 CDD MPN_RPN7_8 15 297 IPR033858 GO:0005838
Pral1569g00003 311 Gene3D Cytidine Deaminase, domain 2 9 202 - -
Pral1569g00003 311 SMART pad1_6 16 158 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pral1569g00003 311 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 202 - -
Pral1569g00003 311 ProSiteProfiles MPN domain profile. 17 159 IPR037518 -
Pral1569g00003 311 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 12 291 - -
Pral1569g00003 311 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 132 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pral1569g00003 311 Pfam Maintenance of mitochondrial structure and function 182 287 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1569g00003 Pral-Chr1569 8791 12114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1569g00003 6 140 Eukaryotic Initiation Factors Gene Family AT2G39990 37.410 6.38e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1569g00003 K03038 - qsu:112031008 442.195