Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1569g00002 ATGGACGTGAATAAGTCGCCGCAAATGTCGTCGGGGCCCATCAAGAAGGTGTTAATACACCCTCTGGTTCTTCTAAGCATCGTCGATCACTACAATCGTGTCTCCCAGCAATCGTTTAGGCGGGTCGTCGGAGTCTTGCTCGGCACCTCCTTCCAAGGCATTGTCGATGTTTCCAACAGCTATGCAGTTCCTTTTGAGGAAGAAGTCACGGACCCAAGTGTCTGGTCCCTTAACCACAACTACCATGAGGCAATGCTTTCTATGTTCAAGAAAATAAATGGGACTCTTGGTGGCTATGTTTCAGATAAGGAGCATGTTGTGGGATGGTACAGTACAGGCCCAAAACTTCGAGCAAATGATCTGGACATACATAGATTATTCCACAAGGAGCCAGGTATCCCAACAAATGCTTACTATGATGTTGAAGAAGGGAAGGAGAATCCTACCCAAAAAAGTCAGAAGGTTTTTGTTCATGTCCCTTCGGAAATTGCTGCTGATGAGGTTGAGGAAATTGGAGTTGGACACTTGTTAAGAGATGTGAAAGATACAACCATCAGTACACTTGCAACTGAGGTTTCTGATAAACTTACAGCCATTAAGGGTTTAGATGCTAGATTAAGAAGGATAAGTTGGTACCTTGGTTTGCTTATTATTGGATGGTATCCATTAAACCATGAGGTACTCTGCCATCTGCAGGATGTGGTCAACCACTGTCCGAATCTGAATGTTCCTGAGTTAATCAAGGCCTTTGTAGTAAAATCAAACGACATGATGTGGGTCATATATCTAACCGCTCTCATCCGTTGTGTCATTGCGCTACACAACTTGATAAACAACAAGATTCTGTACAAGGAATACGAGAAAGCTGAAGATGCAAAGCTACTTGCATTTGAGTCATATCATTCTTGA 909 0.4323 MDVNKSPQMSSGPIKKVLIHPLVLLSIVDHYNRVSQQSFRRVVGVLLGTSFQGIVDVSNSYAVPFEEEVTDPSVWSLNHNYHEAMLSMFKKINGTLGGYVSDKEHVVGWYSTGPKLRANDLDIHRLFHKEPGIPTNAYYDVEEGKENPTQKSQKVFVHVPSEIAADEVEEIGVGHLLRDVKDTTISTLATEVSDKLTAIKGLDARLRRISWYLGLLIIGWYPLNHEVLCHLQDVVNHCPNLNVPELIKAFVVKSNDMMWVIYLTALIRCVIALHNLINNKILYKEYEKAEDAKLLAFESYHS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1569g00002 302 Gene3D Cytidine Deaminase, domain 2 9 187 - -
Pral1569g00002 302 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 12 282 - -
Pral1569g00002 302 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 128 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pral1569g00002 302 SMART pad1_6 16 161 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pral1569g00002 302 Pfam Maintenance of mitochondrial structure and function 167 278 IPR024969 -
Pral1569g00002 302 ProSiteProfiles MPN domain profile. 17 158 IPR037518 -
Pral1569g00002 302 CDD MPN_RPN7_8 15 288 IPR033858 GO:0005838
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1569g00002 Pral-Chr1569 8791 12114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1569g00002 6 209 Eukaryotic Initiation Factors Gene Family AT2G39990 30.047 1.12e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1569g00002 K03038 - qsu:112031008 424.861