Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1566g00012 ATGTCACCTGATTCTAGGACAAAACTGATCACTAGCTTGACCACAAGTGTGCTTCCGTTCATGATAGTGATGATCGTATATGTCATCTATTGCAAAATATGTATTTACCAAAGGCGCAAACCAGCAAAAGTGACAGAACTGGGAAGTGGGAAGAACTCAGACTCAGAGTTTCTGACATATAGAATGGATAAGTTTCTAAATGATATAGAATCAGAAAAGCCAATCAGATTCACATCACATCAACTAATGCGTGCAACAAACAACTACTCCACCATGTTGGGATCAGGAGGTTTTGGATCAGTTTATAAAGGAACATTTAGTGATGGAACTGTTGTCGCAGTGAAAGTTCTACGTAGTGGCATTTCTGACCAGAGAATAGAGGATCAGTTCATGGCTGAAGTTGGCACAATCGGAAAAGTTCATCATTTCAATCTGGTTCGCCTCATTGGATTCTGCATTGAAAAGGATATGACAGCTTTAGTTTATGAGTACATGAGCAATGGTTCTCTTGACAAATATCTGTTTAATGAAGAAAAGGCCTTAGGATTTGAGAAGCTTCATGAGATTGCAGTTGGAACAGCCAAGGCGATTTCTTACTTGCATGAAGAATGCCAAGAAAGGATCATCCACTATGATATAAAACCAGAAAATATCCTTTTAGACGATAATTTGTGTCCTAAAGTTGCTGATTTTGGTTTAGCCAAGCTTTGTAACAGGGAAAAGTCTTATGTCACAATGACAGGTCTGAGAGGGACGCCAGGATATGCTGCACCAGAACTTTGGATGCCTTTTCACGTAACTCACAAGTGCGATGTTTTTAGCTTTGGAATGTTGTTATTTGAGATCATGGGAAGAAGAAGAAACTTTGATGTGAACCTCACAGAAACTCAGGAATGGTTTCCAAGATGTGTTTGGAAAAAGTTTGAGAGCGAAAATCTGCAAGAGTTGATAAGCGATTGTGGTATTACAGGTAAAAATGGGGATGTAGCAGAAAGAATGGCGAGGATAGCATTTTGGTGTGTTCAGTACAGACCAGAATTGAGACCCACAATGAGTGTTGTGGTGAAAATGTTGGAAGGGTCCATGGATATCCCAAAACCTACGAACCCATTTCAACACTTGATGGAAGAAGACCTTCCAATAATCAAAGAAGCACAAAAGGATGATGTTAGCATTGATGTTATCTCATCTCTCGAGGTAACAAAATCTTCCATTGTATCATCTCTTGAGAGATCGATATAG 1242 0.3937 MSPDSRTKLITSLTTSVLPFMIVMIVYVIYCKICIYQRRKPAKVTELGSGKNSDSEFLTYRMDKFLNDIESEKPIRFTSHQLMRATNNYSTMLGSGGFGSVYKGTFSDGTVVAVKVLRSGISDQRIEDQFMAEVGTIGKVHHFNLVRLIGFCIEKDMTALVYEYMSNGSLDKYLFNEEKALGFEKLHEIAVGTAKAISYLHEECQERIIHYDIKPENILLDDNLCPKVADFGLAKLCNREKSYVTMTGLRGTPGYAAPELWMPFHVTHKCDVFSFGMLLFEIMGRRRNFDVNLTETQEWFPRCVWKKFESENLQELISDCGITGKNGDVAERMARIAFWCVQYRPELRPTMSVVVKMLEGSMDIPKPTNPFQHLMEEDLPIIKEAQKDDVSIDVISSLEVTKSSIVSSLERSI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1566g00012 413 SMART serkin_6 87 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1566g00012 413 FunFam Putative receptor-like protein kinase 165 366 - -
Pral1566g00012 413 PANTHER OS07G0415500 PROTEIN 8 371 - -
Pral1566g00012 413 Gene3D Transferase(Phosphotransferase) domain 1 165 370 - -
Pral1566g00012 413 ProSiteProfiles Protein kinase domain profile. 87 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1566g00012 413 CDD STKc_IRAK 93 360 - -
Pral1566g00012 413 Pfam Protein tyrosine and serine/threonine kinase 90 358 IPR001245 GO:0004672|GO:0006468
Pral1566g00012 413 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Pral1566g00012 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Pral1566g00012 413 PIRSF TyrPK_CSF1-R 81 199 - -
Pral1566g00012 413 PIRSF TyrPK_CSF1-R 5 51 - -
Pral1566g00012 413 PIRSF TyrPK_CSF1-R 175 287 - -
Pral1566g00012 413 PIRSF TyrPK_CSF1-R 321 410 - -
Pral1566g00012 413 SUPERFAMILY Protein kinase-like (PK-like) 69 359 IPR011009 -
Pral1566g00012 413 FunFam serine/threonine-protein kinase PBS1-like 59 164 - -
Pral1566g00012 413 Gene3D Phosphorylase Kinase; domain 1 61 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1566g00012 Pral-Chr1566 106097 108305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1566g00012 76 391 Receptor kinase-like Gene Family AT5G38280 41.049 2.37e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Pral1566g00012 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1566g00012 - - pcin:129297340 502.286