Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1564g00001 ATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCGTCTTGGAGGAACATGTGCAAGGAAATTGTGAAGAGCCCAGAATTCTGTGGAAAGCTTACTTTCCCTGTGTCCCTGAAGCAGCCTGGACCAAGAGACGGAATGATTCAGTGTTTTATCAAAAGAGATAAATCTAATTTAACATACCATCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTTCTTCTATCTGCCAAAAGGACGAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCTGACAACATCTCCAGATCAAGTAGCACTTATATTGGAAAGCTGAGATCAAATTTTCTTGGTACAAAATTCATAATATATGATACACAGCCACCATATACTACTGCCCAGATACCCCCTCCAGGGACCGGAAGGACAAGCCGAAGGTTCAATTCCAAAAGGGTCTCACCTAAGGTCCCATCTGGTACCTACAACATAGCTCAGGTGACATATGAATTAAATGTGCTGGGGACACGAGGCCCAAGGAGAATGCACTGTATGATGCATTCAATTCCAGTCTCTGCACTCGATACAGACGGCACAGTTCCTGGCCAACCAGAGCTGCTTCCTTGCGCCCTTGAGGATTCATTCCGTAGCATTTCCTTCTCAAAGTCTCTAGACCACTCCATTGAGTTCAGCAGTGCACGATTTTCTGACATTGGGGCATCCTGCAGCAACGATGAAGAGGATAACAAGATGAGACCCTTGGTTCTGAAGAACAAACCTCCAAGATGGCATGAACAGCTTCAATGCTGGTGCCTCAACTTCCGAGGACGGGTGACAGTTGCTTCTGTCAAAAACTTCCAGTTGATCGCGGCGACCCAGCCAGCTGCTGGCGCACCCACACCGTCTCAGCCGGCCCCACCAGATCATGATAAGATAATTCTGCAGTTTGGCAAAGTTGGGAAAGATATGTTTACCATGGACTACCGATACCCTCTATCTGCTTTCCAGGCTTTCGCAATATGCTTGAGCAGCTTTGACACCAAACTGGCTTGTGAATAG 1065 0.462 MACSKACCCMCCSLPSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTTAQIPPPGTGRTSRRFNSKRVSPKVPSGTYNIAQVTYELNVLGTRGPRRMHCMMHSIPVSALDTDGTVPGQPELLPCALEDSFRSISFSKSLDHSIEFSSARFSDIGASCSNDEEDNKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1564g00001 354 SUPERFAMILY Tubby C-terminal domain-like 28 354 IPR025659 -
Pral1564g00001 354 Pfam Tub family 40 349 IPR000007 -
Pral1564g00001 354 ProSitePatterns Tub family signature 2. 339 354 IPR018066 -
Pral1564g00001 354 PRINTS Tubby superfamily signature 311 330 IPR000007 -
Pral1564g00001 354 PRINTS Tubby superfamily signature 95 111 IPR000007 -
Pral1564g00001 354 PRINTS Tubby superfamily signature 111 135 IPR000007 -
Pral1564g00001 354 PRINTS Tubby superfamily signature 258 275 IPR000007 -
Pral1564g00001 354 PRINTS Tubby superfamily signature 163 190 IPR000007 -
Pral1564g00001 354 PRINTS Tubby superfamily signature 276 292 IPR000007 -
Pral1564g00001 354 PRINTS Tubby superfamily signature 332 354 IPR000007 -
Pral1564g00001 354 Gene3D Tubby Protein; Chain A 36 354 IPR025659 -
Pral1564g00001 354 ProSitePatterns Tub family signature 1. 276 289 IPR018066 -
Pral1564g00001 354 MobiDBLite consensus disorder prediction 135 159 - -
Pral1564g00001 354 PANTHER TUBBY-RELATED 6 352 - -
Pral1564g00001 354 FunFam Tubby-like F-box protein 36 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1564g00001 Pral-Chr1564 147 2657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1564g00001 6 354 TUB Transcription Factor Family AT1G43640 69.252 4.79e-180 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral1564g00001 Tub 2.4e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1564g00001 K19600 - gmx:100814578 626.32