Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1559g00002 ATGAGAAAATTGTGTGAGGCCTGTGCCCAGAAGTGCCTTCCGATTCAGAGAAAGAGAAAAAAATCGTCAAATGTACCTTCTTCCTTCTTCAAGGTCATGATTGGCCCCGATTTTTCTCAAGTTTTGTATCTGCCTCCTAAATTTGGTCGCACAGCGTCAACCCTGGTTGACGAAGAAGCCATTGTTGAGGATTCGAGTGGACAACGATGGACGGTACAAATATCAGTTGTGGATAATTCTTATGCTTTTCACGAGGGATGGAATGCTTTTTCGTTGGATCATGGGCTTGAAGTTGGACACTTTTTGGTGTTCCATTACATGGGAAGATCACACTTTGTTGTTGAGATTTTTGATAAATCTGGGTGTGAAAAGGTTGATTTTCCCGGGCGGAGGGAAGCAGAAGAAGAGAAAAAAGATCAGAATTGA 426 0.4249 MRKLCEACAQKCLPIQRKRKKSSNVPSSFFKVMIGPDFSQVLYLPPKFGRTASTLVDEEAIVEDSSGQRWTVQISVVDNSYAFHEGWNAFSLDHGLEVGHFLVFHYMGRSHFVVEIFDKSGCEKVDFPGRREAEEEKKDQN 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1559g00002 141 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Pral1559g00002 141 Pfam B3 DNA binding domain 29 119 IPR003340 GO:0003677
Pral1559g00002 141 CDD B3_DNA 28 118 IPR003340 GO:0003677
Pral1559g00002 141 PANTHER B3 DOMAIN-CONTAINING 22 138 - -
Pral1559g00002 141 SMART B3_2 29 120 IPR003340 GO:0003677
Pral1559g00002 141 Gene3D - 20 122 IPR015300 -
Pral1559g00002 141 SUPERFAMILY DNA-binding pseudobarrel domain 27 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1559g00002 Pral-Chr1559 5307 6239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1559g00002 29 128 B3 DNA Binding Superfamily AT4G01580 30.693 2.09e-14 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral1559g00002 B3 5.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1559g00002 - - pcin:129308262 211.075