Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1555g00005 ATGCGAGAGAAATCAGCACATTTTGACTGCATAGATGAGATGACTCATTCAGATATGGATCGGCGAAGGCATGGGAATTCTAATTCTGAACCTTCTACCGTTGTGAGTAGTGCCAACATTTTGCGGCCAAATATCCGCGCAGTGGCAATGGCTTCAGGGAACACGAGTAATGTTGATTCCCACTATTCACCAGATGTCTATGACACTGCAGTAATGCATAGAGGGACACAATACAATGCCATTCAAAATCAACGTAATCTTGATATGGGTGTTGCAGCTGTGGCCAACTTGCATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTACCGCTTCCTTCAAATCACGGAGCCTATGATCAGTTGCCAGCGTCAACCACATTTGCTGTATACGGAGTTTCTTCAGATAATTTTGGGAGGATCAGCAGCTATGCAGATGACGTCAGAGCTTCATTCAAAAGGAAAAATGCTGAAACTGTCAGGGGCAATTTCCCACATTTTGATGCCTCAGCTAGTTCTTCAGTCGTTCCCCCAGATGCAAGGCACTCTGACGGGGTTACTATTATGGATACTGCTTCCTTGCCCCCTCCTCAATTCCGAGGAAATAGCATCCCTTCACCCATGGACTTAGGTCCCTTTGGTAGTTTGTGGAGCAGGTCAGGTGAGTCTGTTATGGTGCATGAACATAGCCATTTGATTCAAGGTAATTATTTAGGGCAGCCCTTCCAGCCAGTTGCTCCTCCCTGGTTGGATCAACAGTTGAACAACAGTCACAGTGATGGGCATGCTACAGCTTGGAATCAGTCTCTTCCAATGCCTTACGTGCAAGCACCCAATGTTAATGGAAGTTCATTGGAGAATGCAACTATGGGTTTGCAGAGATATCATGATTCAGCTAGTAACATTAATGGCCTCAGGTTTGTTCATCCTCTTGTCAACCACCAGTACCATAATTATCATCATCCAGCAGTACCAATGAGAGGATTCAGAGGCCACAATATCATGTTTCAACCTCCAGTAACTGCAGCTTCTTATAGAGTTCCTACAAATCCTTTACGCAATGCTGTGATCCCTGCACAGAATGGTTTTGAGATGGGTCATAGGCCTGTTGGCCTTGTACCTTCAGCAGGCCTACAGGATGTTGCAATACTGGATGAAGTGGGATTGGTCGACCATCACAGAGATATGCGCTTGGACATTGAGGATATGTCTTACGAGGAGCTTCTCGCATTGAGTGAGCGAATTGGCAACGTAAGCACTGGTTTATCAGAAGAGTCCATTTCAGCTTTAATGAAAACTAGAATTTATGCAACACCCACTATTATTAACCTGGAAGAGGAAGAAGCTTCAGAGGATCAGGAAACTGATTCATGCACAATATGCCTGGAGAAATATGAGAACAAACAGAAGATAGGAATTCTTCAATGCGGTCATGAGTATCATGCACATTGCTTGAAGAGATGGCTTAAGGAGAAAAATGTATGTCCCATATGCAAATCAGAAGCATTGAGTCCGGGAAAGGACAAGGATATAAAAACCAAATGA 1548 0.4406 MREKSAHFDCIDEMTHSDMDRRRHGNSNSEPSTVVSSANILRPNIRAVAMASGNTSNVDSHYSPDVYDTAVMHRGTQYNAIQNQRNLDMGVAAVANLHYSGMNPSSSTGVLPLPSNHGAYDQLPASTTFAVYGVSSDNFGRISSYADDVRASFKRKNAETVRGNFPHFDASASSSVVPPDARHSDGVTIMDTASLPPPQFRGNSIPSPMDLGPFGSLWSRSGESVMVHEHSHLIQGNYLGQPFQPVAPPWLDQQLNNSHSDGHATAWNQSLPMPYVQAPNVNGSSLENATMGLQRYHDSASNINGLRFVHPLVNHQYHNYHHPAVPMRGFRGHNIMFQPPVTAASYRVPTNPLRNAVIPAQNGFEMGHRPVGLVPSAGLQDVAILDEVGLVDHHRDMRLDIEDMSYEELLALSERIGNVSTGLSEESISALMKTRIYATPTIINLEEEEASEDQETDSCTICLEKYENKQKIGILQCGHEYHAHCLKRWLKEKNVCPICKSEALSPGKDKDIKTK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1555g00005 515 Pfam Ring finger domain 457 500 IPR001841 -
Pral1555g00005 515 SMART ring_2 459 499 IPR001841 -
Pral1555g00005 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 504 IPR013083 -
Pral1555g00005 515 SUPERFAMILY RING/U-box 448 504 - -
Pral1555g00005 515 MobiDBLite consensus disorder prediction 1 27 - -
Pral1555g00005 515 CDD RING-H2_RNF24-like 457 503 - -
Pral1555g00005 515 ProSiteProfiles Zinc finger RING-type profile. 459 500 IPR001841 -
Pral1555g00005 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 100 505 IPR045191 GO:0061630
Pral1555g00005 515 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1555g00005 Pral-Chr1555 10076 13075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1555g00005 392 504 C3H Transcription Factor Family AT2G15530 51.304 3.07e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1555g00005 K19041 - qsa:O6P43_029149 564.303