Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1555g00003 ATGCGAGAGAAATCAGCACATTTTGACTGCATAGATGAGATGACTCATTCAGATATGGATCGGCGAAGGCATGGGAATTCTAATTCTGAACCTTCTACCGTTGTGAGTAGTGCCAACATTTTGCGGCCAAATATCCGCGCAGTGGCAATGGCTTCAGGGAACACGAGTAATGTTGATTCCCACTATTCACCAGATGTCTATGACACTGCAGTAATGCATAGAGGGACACAATACAATGCCATTCAAAATCAACGTAATCTTGATATGGGTGTTGCAGCTGTGGCCAACTTGCATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTACCGCTTCCTTCAAATCACGGAGCCTATGATCAGTTGCCAGCGTCAACCACATTTGCTGTATACGGAGTTTCTTCAGATAATTTTGGGAGGATCAGCAGCTATGCAGATGACGTCAGAGCTTCATTCAAAAGGAAAAATGCTGAAACTGTCAGGGGCAATTTCCCACATTTTGATGCCTCAGCTAGTTCTTCAGTCGTTCCCCCAGATGCAAGGCACTCTGACGGGGTTACTATTATGGATACTGCTTCCTTGCCCCCTCCTCAATTCCGAGGAAATAGCATCCCTTCACCCATGGACTTAGGTCCCTTTGGTAGTTTGTGGAGCAGGTCAGGTGAGTCTGTTATGGTGCATGAACATAGCCATTTGATTCAAGGTAATTATTTAGGGCAGCCCTTCCAGCCAGTTGCTCCTCCCTGGTTGGATCAACAGTTGAACAACAGTCACAGTGATGGGCATGCTACAGCTTGGAATCAGTCTCTTCCAATGCCTTACGTGCAAGCACCCAATGTTAATGGAAGTTCATTGGAGAATGCAACTATGGGTTTGCAGAGATATCATGATTCAGCTAGTAACATTAATGGCCTCAGGTTTGTTCATCCTCTTGTCAACCACCAGTACCATAATTATCATCATCCAGCAGTACCAATGAGAGGATTCAGAGGCCACAATATCATGTTTCAACCTCCAGTAACTGCAGCTTCTTATAGAGTTCCTACAAATCCTTTACGCAATGCTGTGATCCCTGCACAGAATGGTTTTGAGATGGGTCATAGGCCTGTTGGCCTTGTACCTTCAGCAGGCCTACAGGTATATCGTCCTCATAGAGGATACATGAATGAGACAACAATTGGGCATCAAAATCTTCACCCTATGGGCTATCTCCAAGTTGATGTAGATGTTGCAATACTGGATGAAGTGGGATTGGTCGACCATCACAGAGATATGCGCTTGGACATTGAGGATATGTCTTACGAGGAGCTTCTCGCATTGAGTGAGCGAATTGGCAACGTAAGCACTGGTTTATCAGAAGAGTCCATTTCAGCTTTAATGAAAACTAGAATTTATGCAACACCCACTATTATTAACCTGGAAGAGGAAGAAGCTTCAGAGGATCAGGAAACTGATTCATGCACAATATGCCTGGAGAAATATGAGAACAAACAGAAGATAGGAATTCTTCAATGCGGTCATGAGTATCATGCACATTGCTTGAAGAGATGGCTTAAGGAGAAAAATGTATGTCCCATATGCAAATCAGAAGCATTGAGTCCGGGAAAGGACAAGGATATAAAAACCAAATGA 1635 0.4385 MREKSAHFDCIDEMTHSDMDRRRHGNSNSEPSTVVSSANILRPNIRAVAMASGNTSNVDSHYSPDVYDTAVMHRGTQYNAIQNQRNLDMGVAAVANLHYSGMNPSSSTGVLPLPSNHGAYDQLPASTTFAVYGVSSDNFGRISSYADDVRASFKRKNAETVRGNFPHFDASASSSVVPPDARHSDGVTIMDTASLPPPQFRGNSIPSPMDLGPFGSLWSRSGESVMVHEHSHLIQGNYLGQPFQPVAPPWLDQQLNNSHSDGHATAWNQSLPMPYVQAPNVNGSSLENATMGLQRYHDSASNINGLRFVHPLVNHQYHNYHHPAVPMRGFRGHNIMFQPPVTAASYRVPTNPLRNAVIPAQNGFEMGHRPVGLVPSAGLQVYRPHRGYMNETTIGHQNLHPMGYLQVDVDVAILDEVGLVDHHRDMRLDIEDMSYEELLALSERIGNVSTGLSEESISALMKTRIYATPTIINLEEEEASEDQETDSCTICLEKYENKQKIGILQCGHEYHAHCLKRWLKEKNVCPICKSEALSPGKDKDIKTK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1555g00003 544 Pfam Ring finger domain 486 529 IPR001841 -
Pral1555g00003 544 MobiDBLite consensus disorder prediction 1 27 - -
Pral1555g00003 544 CDD RING-H2_RNF24-like 486 532 - -
Pral1555g00003 544 ProSiteProfiles Zinc finger RING-type profile. 488 529 IPR001841 -
Pral1555g00003 544 SMART ring_2 488 528 IPR001841 -
Pral1555g00003 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 533 IPR013083 -
Pral1555g00003 544 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 100 534 IPR045191 GO:0061630
Pral1555g00003 544 MobiDBLite consensus disorder prediction 1 35 - -
Pral1555g00003 544 SUPERFAMILY RING/U-box 477 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1555g00003 Pral-Chr1555 10073 13075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1555g00003 421 533 C3H Transcription Factor Family AT2G15530 51.304 4.75e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1555g00003 K19041 - qsa:O6P43_029149 598.971