Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1555g00002 ATGACTCATTCAGATATGGATCGGCGAAGGCATGGGAATTCTAATTCTGAACCTTCTACCGTTGTGAGTAGTGCCAACATTTTGCGGCCAAATATCCGCGCAGTGGCAATGGCTTCAGGGAACACGAGTAATGTTGATTCCCACTATTCACCAGATGTCTATGACACTGCAGTAATGCATAGAGGGACACAATACAATGCCATTCAAAATCAACGTAATCTTGATATGGGTGTTGCAGCTGTGGCCAACTTGCATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTACCGCTTCCTTCAAATCACGGAGCCTATGATCAGTTGCCAGCGTCAACCACATTTGCTGTATACGGAGTTTCTTCAGATAATTTTGGGAGGATCAGCAGCTATGCAGATGACGTCAGAGCTTCATTCAAAAGGAAAAATGCTGAAACTGTCAGGGGCAATTTCCCACATTTTGATGCCTCAGCTAGTTCTTCAGTCGTTCCCCCAGATGCAAGGCACTCTGACGGGGTTACTATTATGGATACTGCTTCCTTGCCCCCTCCTCAATTCCGAGGAAATAGCATCCCTTCACCCATGGACTTAGGTCCCTTTGGTAGTTTGTGGAGCAGGTCAGGTGAGTCTGTTATGGTGCATGAACATAGCCATTTGATTCAAGGTAATTATTTAGGGCAGCCCTTCCAGCCAGTTGCTCCTCCCTGGTTGGATCAACAGTTGAACAACAGTCACAGTGATGGGCATGCTACAGCTTGGAATCAGTCTCTTCCAATGCCTTACGTGCAAGCACCCAATGTTAATGGAAGTTCATTGGAGAATGCAACTATGGGTTTGCAGAGATATCATGATTCAGCTAGTAACATTAATGGCCTCAGGTTTGTTCATCCTCTTGTCAACCACCAGTACCATAATTATCATCATCCAGCAGTACCAATGAGAGGATTCAGAGGCCACAATATCATGTTTCAACCTCCAGTAACTGCAGCTTCTTATAGAGTTCCTACAAATCCTTTACGCAATGCTGTGATCCCTGCACAGAATGGTTTTGAGATGGGTCATAGGCCTGTTGGCCTTGTACCTTCAGCAGGCCTACAGGTATATCGTCCTCATAGAGGATACATGAATGAGACAACAATTGGGCATCAAAATCTTCACCCTATGGGCTATCTCCAAGTTGATGTAGATGTTGCAATACTGGATGAAGTGGGATTGGTCGACCATCACAGAGATATGCGCTTGGACATTGAGGATATGTCTTACGAGGAGCTTCTCGCATTGAGTGAGCGAATTGGCAACGTAAGCACTGGTTTATCAGAAGAGTCCATTTCAGCTTTAATGAAAACTAGAATTTATGCAACACCCACTATTATTAACCTGGAAGAGGAAGAAGCTTCAGAGGATCAGGAAACTGATTCATGCACAATATGCCTGGAGAAATATGAGAACAAACAGAAGATAGGAATTCTTCAATGCGGTCATGAGTATCATGCACATTGCTTGAAGAGATGGCTTAAGGAGAAAAATGTATGTCCCATATGCAAATCAGAAGCATTGAGTCCGGGAAAGGACAAGGATATAAAAACCAAATGA 1596 0.4392 MTHSDMDRRRHGNSNSEPSTVVSSANILRPNIRAVAMASGNTSNVDSHYSPDVYDTAVMHRGTQYNAIQNQRNLDMGVAAVANLHYSGMNPSSSTGVLPLPSNHGAYDQLPASTTFAVYGVSSDNFGRISSYADDVRASFKRKNAETVRGNFPHFDASASSSVVPPDARHSDGVTIMDTASLPPPQFRGNSIPSPMDLGPFGSLWSRSGESVMVHEHSHLIQGNYLGQPFQPVAPPWLDQQLNNSHSDGHATAWNQSLPMPYVQAPNVNGSSLENATMGLQRYHDSASNINGLRFVHPLVNHQYHNYHHPAVPMRGFRGHNIMFQPPVTAASYRVPTNPLRNAVIPAQNGFEMGHRPVGLVPSAGLQVYRPHRGYMNETTIGHQNLHPMGYLQVDVDVAILDEVGLVDHHRDMRLDIEDMSYEELLALSERIGNVSTGLSEESISALMKTRIYATPTIINLEEEEASEDQETDSCTICLEKYENKQKIGILQCGHEYHAHCLKRWLKEKNVCPICKSEALSPGKDKDIKTK 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1555g00002 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 520 IPR013083 -
Pral1555g00002 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 89 521 IPR045191 GO:0061630
Pral1555g00002 531 Pfam Ring finger domain 473 516 IPR001841 -
Pral1555g00002 531 SUPERFAMILY RING/U-box 464 520 - -
Pral1555g00002 531 ProSiteProfiles Zinc finger RING-type profile. 475 516 IPR001841 -
Pral1555g00002 531 SMART ring_2 475 515 IPR001841 -
Pral1555g00002 531 MobiDBLite consensus disorder prediction 1 23 - -
Pral1555g00002 531 CDD RING-H2_RNF24-like 473 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1555g00002 Pral-Chr1555 8132 13075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1555g00002 408 520 C3H Transcription Factor Family AT2G15530 51.304 2.91e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1555g00002 K19041 - qsa:O6P43_029149 598.201