Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1553g00007 ATGCTTCTGCAACAAAAGATGGATGAAGCAGAAATTTCAAGTGGTTTTTCTCATCAGAACCCAACTGATCATCTTGAATCCAGTAATAATATTGTTCCTCCAGTTTTGAAGAGGAAGAGAAACCTTCCAGGAAATCCAGATCCTGAAGCAGAGGTCATAGCCTTGTCGCCGAAGACACTGATGGCCACCAACAGATTCTTGTGTGAAATATGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAGCTCCATCGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAGAGGACAAGCAAAGAACCGAAGAAGAGAGTGTATGTGTGCCCTGAAAAGACTTGTGTCCACCACGACCCTTCAAGGGCTCTGGGAGACTTAACAGGGATAAAGAAGCACTTTTGCAGAAAGCACGGAGAGAAGAAATGGAAGTGCGAGAAGTGTTCAAAGCGATACGCTGTCCAGTCAGACTGGAAAGCCCACTCTAAGACCTGTGGCACCAGAGAATACAAATGTGATTGTGGGACTGTCTTTTCACGGAGAGACAGTTTCATAACCCACAGGGCATTCTGCGATGCCTTAGCAGAAGAGACGGCAAGAGTGAATGCAGCATCTACAGTGAATAACTCCTTTCTGGGTTACAACATCATGGAAAATTCCCAAGGGCCTGCCATAAGCATGACCACACATTTTCCTTCCATTTTCAAGCCAATTTCAAACACTGGTGTTGAAACAAACCATCAAGCACCTGGGGGACTATCCCTGTGGATGGGTCCAGCTCAAACGCAAGGTCCTCGAGCTCATGACACAATGGCCAATACTTTGAACAATAATAACAGTAACATGTTTGAGATTCATCACCATCAACTTGGGTCAGTCACATCAGGATCAATACTATACGGGAACAACCCGCTTGTTTCGTGCTCAAATCCTCGGCTGAATTGGGTGTTTGGCGGTAATAATAAGAACGGTAGTCGTCATCATCAAGACCAGCTGATCAGTGTTCCTTCCTTGTACAGCTCCCAACATCAGCAATGCCATCAAACATCCTCGGCAAACATGTCTGCCACAGCTTTGTTGCAGAAAGCTGCTCAAATCGGGGCAACCTCAACCGACAGATCATTCCTGGGAACCTTAGGGTTGAAATGCAGCAACAGTCACGGACAGGAAGGGAACAAATTTTGTGGGATCTATGGTTCAGGTTCAGTACTCGTATCTAGCCTGGAAAGCGAGACAGAGAACCCAGCAAAACGCAGGAATATACAGCAGAAAGAAGAGAACAATAATGGAGGAGAGCAAACTAGGGATTTTCTGGGTGTGGGTATAGAATCCATTTGCCATGCCGCTCCAATCAACGGATGGATTTGA 1365 0.4586 MLLQQKMDEAEISSGFSHQNPTDHLESSNNIVPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPKKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASTVNNSFLGYNIMENSQGPAISMTTHFPSIFKPISNTGVETNHQAPGGLSLWMGPAQTQGPRAHDTMANTLNNNNSNMFEIHHHQLGSVTSGSILYGNNPLVSCSNPRLNWVFGGNNKNGSRHHQDQLISVPSLYSSQHQQCHQTSSANMSATALLQKAAQIGATSTDRSFLGTLGLKCSNSHGQEGNKFCGIYGSGSVLVSSLESETENPAKRRNIQQKEENNNGGEQTRDFLGVGIESICHAAPINGWI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1553g00007 454 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 439 IPR031140 -
Pral1553g00007 454 MobiDBLite consensus disorder prediction 411 430 - -
Pral1553g00007 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Pral1553g00007 454 MobiDBLite consensus disorder prediction 409 434 - -
Pral1553g00007 454 MobiDBLite consensus disorder prediction 10 29 - -
Pral1553g00007 454 FunFam protein indeterminate-domain 12-like 45 113 - -
Pral1553g00007 454 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Pral1553g00007 454 Gene3D Classic Zinc Finger 62 89 - -
Pral1553g00007 454 SMART c2h2final6 107 137 IPR013087 -
Pral1553g00007 454 SMART c2h2final6 142 162 IPR013087 -
Pral1553g00007 454 SMART c2h2final6 66 88 IPR013087 -
Pral1553g00007 454 MobiDBLite consensus disorder prediction 1 48 - -
Pral1553g00007 454 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Pral1553g00007 454 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pral1553g00007 454 Gene3D Classic Zinc Finger 101 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1553g00007 Pral-Chr1553 28645 30965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1553g00007 33 454 IDZ Gene Family AT1G03840 49.798 2.43e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1553g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1553g00007 K25870 - zju:107417196 561.992