Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1552g00002 ATGCTTGTGAAAATCCATGATCCACGGTTGAATATGTGGAGTTTTGTACGACCGTTTAGTTGGAATCTTTGGTTGTCTATCGCTATGTTCTCTGCTTTTATAGGAGCTATCATACTATTCATGGAACGTAATGTCAGAAAAGATTCAACACTTGAAAATTCATCATGGAGGAAACGATGCATTACAGGGGGTTCTGTCCTGTGGCTTCCTGCTGTGCAAGCAGTTTTTCCAAAAAGAGAATCATTGACCAAAACTTCTTCTAGGTTTGTGCTGATGATGTGGTTGATACTGGTATTTGTGCTCATGCAAAGCTACACAGCATGCTTATCATCGATCTTAATAGTGCATGAGTTACAACCTCAGTACCTTAGTGAGAACGATGTTATAAAGGATAGCAACATTAATGTTGGATACAAAAGTGGCTCATTTGTGGGAGACTTGTTGGTCAATAAATTGACAATGGGTGATGAGTCAAGGGTGAAGAATTACTATGGCATTGAAGAATATAAGGAGGCTTTAGACAAAGGAAGCCATAATGATGGAGTCGATGCTATTTTTGATGAGTCTCCCTACTTTAAGACCTTCCTCCACCGGTATGGCTCCAAGAATTATGCCGTGGTTGGAACTAGTCTCCATTATGGTGGATTTGGTTTTGCATTTCGTAAGGGCTCCAACTTAACCGCATACTTTTCTGAAGCCATATTAAATATCACCGAGAGTAATGTAATAATGAAAAGGATTGAGGAGACATATTTTGGAGACAGCGATGATGATGATGGAAAAGAAGACCTATATAATTCACCATCACATGACGTTAGTCCCAGTCTTACTGCTTACAGCTTTGCAGGTTTGTTCGTGGTGATTGGGATTCTTTCACTGTTGGCTTTGCTAGTCTCTGAAATGCTCGCAAAGGTTGATAGCCAACGATTACTGAGTCCGAGTTCTGCAAGATTAAGTCCATTAGAGGAAGGTTCTGAAACAAGAAATAATGTTGACGAAGAATGTTCTGCAGACACACAAAATATCGGATCAGAAAATGGAGGAGATAATAAAACATTGCCCGTGTAA 1068 0.3979 MLVKIHDPRLNMWSFVRPFSWNLWLSIAMFSAFIGAIILFMERNVRKDSTLENSSWRKRCITGGSVLWLPAVQAVFPKRESLTKTSSRFVLMMWLILVFVLMQSYTACLSSILIVHELQPQYLSENDVIKDSNINVGYKSGSFVGDLLVNKLTMGDESRVKNYYGIEEYKEALDKGSHNDGVDAIFDESPYFKTFLHRYGSKNYAVVGTSLHYGGFGFAFRKGSNLTAYFSEAILNITESNVIMKRIEETYFGDSDDDDGKEDLYNSPSHDVSPSLTAYSFAGLFVVIGILSLLALLVSEMLAKVDSQRLLSPSSARLSPLEEGSETRNNVDEECSADTQNIGSENGGDNKTLPV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1552g00002 355 Pfam Bacterial extracellular solute-binding proteins, family 3 134 253 IPR001638 -
Pral1552g00002 355 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 305 IPR015683 -
Pral1552g00002 355 SUPERFAMILY Periplasmic binding protein-like II 1 254 - -
Pral1552g00002 355 Pfam Ligand-gated ion channel 20 290 IPR001320 GO:0015276|GO:0016020
Pral1552g00002 355 SMART GluR_14 37 254 IPR001320 GO:0015276|GO:0016020
Pral1552g00002 355 Gene3D - 9 151 - -
Pral1552g00002 355 MobiDBLite consensus disorder prediction 315 355 - -
Pral1552g00002 355 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1552g00002 Pral-Chr1552 11186 13150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1552g00002 13 334 Ion Channels AT5G11210 32.716 1.04e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1552g00002 K05387 - pcin:129319703 417.157