Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1549g00006 ATGGAACAAGGTCAATGTTGGGTTTGGACCAAGAGAAAGCACTCATCTTTGAGCTCTTATAATGCTCTTGCTTCACCGAGTCACAACTTCACCTATGGCGATTCATGGGAAGAACAAGCTTTCGCAGAAGATGAGCGTCTTGGTGGGTGTATTTGGCCTCCAAGATCATACTCTTGCAGCTTTTGCAGCAGAGAGTTCAGGTCAGCCCAAGCTCTAGGAGGCCACATGAATGTTCACAGAAGAGATAGAGCTAGGCTAAAGCAACCCCCAAGTCCACAAAAACAAGATGAAACCAGTCTTGAATATCAAAATTCTCTCACATCTACTTCTTTGGCTTATTCCAACGCTAACCCTAATTCTGATCATCATCCCGAGGCTAAATTAGCCCCTCCATCTTTGATTCAAGAGAATTCCGCCCCACCATATGATTCTTGTATTTCATGGTCAAACTTTGCTGAACGAAAATTATATTCTCGAAAGGTCGATCTTATTGGATCTGGGGATGAGAAGATGTCCGAGATAGTAGGCACTGATTGTAATAAGGAAGAAGCTGATATTATGAGCTGCAAGAGGAGAAGAATAACAGATGATTCATCATCAATTCCATTCTCCTCAAAATCAATTCCAGTTGTTAATCGGCACGATCATATCAAGTCTCAGATGTTCGAGTTTATTAGTCCTAGTTCCAGTGAAGAACTAGATCTGGAGCTAAGGCTTGGTCACAGTCCTCCCAAGGTATAG 741 0.4251 MEQGQCWVWTKRKHSSLSSYNALASPSHNFTYGDSWEEQAFAEDERLGGCIWPPRSYSCSFCSREFRSAQALGGHMNVHRRDRARLKQPPSPQKQDETSLEYQNSLTSTSLAYSNANPNSDHHPEAKLAPPSLIQENSAPPYDSCISWSNFAERKLYSRKVDLIGSGDEKMSEIVGTDCNKEEADIMSCKRRRITDDSSSIPFSSKSIPVVNRHDHIKSQMFEFISPSSSEELDLELRLGHSPPKV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1549g00006 246 Gene3D Classic Zinc Finger 54 117 - -
Pral1549g00006 246 MobiDBLite consensus disorder prediction 73 102 - -
Pral1549g00006 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Pral1549g00006 246 SMART c2h2final6 57 79 IPR013087 -
Pral1549g00006 246 SUPERFAMILY beta-beta-alpha zinc fingers 54 83 IPR036236 -
Pral1549g00006 246 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Pral1549g00006 246 PANTHER OS07G0101800 PROTEIN 33 243 - -
Pral1549g00006 246 MobiDBLite consensus disorder prediction 76 90 - -
Pral1549g00006 246 Pfam C2H2-type zinc finger 57 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1549g00006 Pral-Chr1549 35099 35839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1549g00006 1 246 C2H2 Transcription Factor Family AT5G06070 34.328 6.68e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1549g00006 zf-C2H2_6 9.6e-07 CL0361