LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1541g00004	ATGGCATTCTCACTTGTCAAAATCTCCTGTTGCCTTCATGTCACTGCCACCTATCTCATAGACCCCGCTATTGTCGGTGGTCCTAGCATGCTTCCGACAATGGGTCCGATGGCTACCTTTTTATTGACCGAAAGGAACTCCCTGCGTTTTGGTAAAGTTGAGCGCGGGGATATTGTCTTGGTGCGGTCACCTGTAAACCCTCGAAATTTATTGACCAAGCGCTTGCTTGGATTGGAGGGTGATAGTGTCACATTTCTCGTCGATCCTAGGAACAGTGATAAATGCGAGACTATAGTGGTTCCCAAGGGGCACGTTTGGGTACAGGGGGATAACATATATAATTCCAGGGATTCAAGACAATTTGGTTCTGTTCCTTATGGTCTTCTTTATGCCAAGGTCTTTTGGAGGTTATGGCCACTTGGAGGTTTTGGACCCCTGGGCAAAAACTGA	450	0.4711	MAFSLVKISCCLHVTATYLIDPAIVGGPSMLPTMGPMATFLLTERNSLRFGKVERGDIVLVRSPVNPRNLLTKRLLGLEGDSVTFLVDPRNSDKCETIVVPKGHVWVQGDNIYNSRDSRQFGSVPYGLLYAKVFWRLWPLGGFGPLGKN	149

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1541g00004	149	Gene3D	Umud Fragment, subunit A	15	143	-	-
	Pral1541g00004	149	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	100	119	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral1541g00004	149	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	71	83	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral1541g00004	149	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	18	34	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral1541g00004	149	SUPERFAMILY	LexA/Signal peptidase	17	146	IPR036286	-
	Pral1541g00004	149	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	3	148	-	-
	Pral1541g00004	149	Pfam	Signal peptidase, peptidase S26	94	138	IPR019533	GO:0004252\|GO:0006465
	Pral1541g00004	149	Pfam	Signal peptidase, peptidase S26	5	85	IPR019533	GO:0004252\|GO:0006465
	Pral1541g00004	149	CDD	S26_SPase_I	22	133	IPR019533	GO:0004252\|GO:0006465
	Pral1541g00004	149	FunFam	Inner membrane protease subunit 1	16	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1541g00004	Pral-Chr1541	14312	15512	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1541g00004	30	147	MADS-box Gene Family	AT1G29960	57.627	1.39e-48	150

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1541g00004	K09647		-	psom:113300611	204.142