Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1541g00002 ATGGGTCGTCGGAAAATCAAGATGGAGATGGTGAAGGACGCAGCGTCGAGGTTGGTGACGTTCTCAAAGCGCCGGAACGGGCTCTTCAAGAAAGCGAACGAGTTAGCAATCCTGTGCGGCGCCGAACTCGCCATTGTGGTGTTCTCGCCAGGCGGCAAACCTTTCTCCTTCGGCCATCCGTCCGTCGACGTGGTGACTCAGAGGTTTCTCCGGCACCTCCACGACGAGGAGGACGAGGACGAGGAGGAAGCGAAATGGCCGAAACTGAACAAGCGGCTAATTAATCTGACGAGGCAGCTGGAGGAAGAGAAGAAAAAAGGCGCAATGCTGGACAAGGCGATAGAGGAGAAGATGGCCAAGTACGGGCTGGGGCCTGAGAGCGGTCCTGATGATCTGAGCAAGCTGGAGGGGTTCAAGCGGTCGCTGGAGAAACTCAGGGAAGACGTGAAGCTGCGGAAGAGAGAAATGGAGGCTGCGTCGTCTTTGCTGGTACTTGCAGAGAAAGAGAACAAGAAGAGCAGAGGCAGAGAAGTCACAGTTCCAAGAGTTCCTTCCCATGTCAGCATAGTACTGATTCATAACAACGGAGGCATGGTTGATGAGTGTGTTAGGGAAGAAGCAGGCTCCGCCTTCCTGAATCAGCCTGCACGAATCCCTCACGTGACTGCATGCATACGTAATATCTGCTTCCAGCTCCGCTTCACTTGCTGA 711 0.5443 MGRRKIKMEMVKDAASRLVTFSKRRNGLFKKANELAILCGAELAIVVFSPGGKPFSFGHPSVDVVTQRFLRHLHDEEDEDEEEAKWPKLNKRLINLTRQLEEEKKKGAMLDKAIEEKMAKYGLGPESGPDDLSKLEGFKRSLEKLREDVKLRKREMEAASSLLVLAEKENKKSRGREVTVPRVPSHVSIVLIHNNGGMVDECVREEAGSAFLNQPARIPHVTACIRNICFQLRFTC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1541g00002 236 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Pral1541g00002 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1541g00002 236 PANTHER MADS BOX PROTEIN 3 151 - -
Pral1541g00002 236 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Pral1541g00002 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1541g00002 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1541g00002 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1541g00002 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pral1541g00002 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1541g00002 236 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Pral1541g00002 236 Coils Coil 135 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1541g00002 Pral-Chr1541 8298 18071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1541g00002 1 168 Type I MADS-box Gene Family AT2G34440 43.820 5.62e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral1541g00002 SRF-TF 5.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1541g00002 - - pcin:129305499 252.677