Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1541g00001 ATGCCTCCAAAGATCAGTTTGACTATACTCATAGTCTTGTTCATTTCCATTTCAAATATACTTTCAAATGCTGAATCAAGCTCCCTGGAAGTTGAAATTGAAGCTTTGAAAGCTTTCAAAAGCTCTATCACTCACGACCCAAATGGAGCATTGGCAGATTGGGTTGACACAACCCATCATTGCAACTGGTCTGGCATTGCTTGTGACCCGTCTCAACATGTTACCTCACTCAGTCAGGTTGGCCAAAAGCTCCAAGGTAAGATTTCACCATTCCTGGGCAATCTTTCTGGCCTCCAGATTCTTGACTTAACCTCAAATTCATTTTCTGGGCTCATTCCTCCTCAGCTCAGCTTTTGCTCCCAGCTTTCTCAATTGGTTCTTTTTAACAACTCTCTCTGGGGTCCAATCCCATCTGAGCTAGGAAACTTGAAAGGCCTGCAGTATTTGGATTTGGGTAATAACAATCTGAATGGAAGCCTCCCAGAAAGCTTATTTAACTGCACCTCTTTGCTAGGTATTGCTTTTAATTCTAACAATCTGGATGGTAAAATTCCTTCAAATATTGGCAACTTGGTTAACGTTACGCTAGTCGCAGGATTTACTAATAAGTTTGTTGGATCTATTCCTCCTTCAATAGGTAAGTTAAGGGCTTTGCAATCTCTAGATTTTAGTCAAAACCAGTTGTCAGGAGGCATACCTAGAGAGATTGGGAACCTCGGAAATTTAGAATATCTTGTTCTATTTGAGAATTCCTTGGGAAAAATCCCTTCTGAACTTGGTCAGTGCATGAAGCTAGTGAACCTTGAACTATACACAAATCAGTTGTCTGGAAGCATTCCTTTCGAGCTCGGAAACTTAGTTCATTTGGAGACATTAAGGATATATGGCAATAACTTCACCTCCACAATTCCTTCTTCCATTTTCCAGCTGAAATTATTAACCAACTTGGGTCTGTCACAGAATCGGTTAGAGGGAATAATATCTCCTGAAATTGGATCTTTGAAATCACTTAAAGTTCTAACCCTGCATTCAAATAAGTTTACTGGACAAATTCCTCCATCAATCACAAACTTGACAAACTTAACATATCTCTCAATGAGCCAGAATCTCCTTTCAGGTAGACTTCCTTCCAACATAGGAGTGCTTCATAATTTGAAGTTTCTAGTCTTGCACGCCAACCGTTTTCATGGTCATATCCCCCCTAGTATTACCAATTGTACTAGTATGGTGAATGTAAGTTTAGCCTTTAATTCACTAAATGGGAACATTCCTGAAGGCTTTTCAAGGATGCCTAATCTTACTTTCTTGTCTTTTGCATCAAACAAAATGTCCGGTGAAATCCCAGATGATCTCTTCAACTGCTCAAATCTTCGAACTCTAAGTTTGGCTGAGAACTACTTTAGTGGGATGCTAAAACCTATTATCCAAAACCTGTTCAATCTCAGGATGCTTCAGCTGAATTTAAATTCTTTCACAGGGCCTATTCCACTTGAAATAGGGAATTTAAATCAACTGACATTATCACTTTCTGATAATAGATTTTCTGGTCACATTCCTTTAGAGCTATCCAACCTCAGTCTTCTTCAGGGTCTATACTTGCATGGGAATGCATTGGAAGGAACAATACCAAATCAGTTCTTTGAACTAAATCAGCTAACAGAGCTTGAGCTACATGAGAACAAGCTGGTTGGTCAAATCCCAAAGGCTTTCTCCAAGCTTAAGATGCTTTCTTACTTAGACCTCCATGGGAACATGTTCAATGGATCAATTCCAAGAGAGTTGAGACAGCTCAGCCAGCTCTTGATGCTGGATTTGTCACAGAACCACCTGACTGGGTCAATTCCTGGGGATGTCATCGTATATTTTAGAGGCATGCAGCTATATCTCAATTTGTCTCATAACCACTTTATTGGAAGTATACCGGAAGAGCTTGGTATGATGGAAATGGTACAAGCCATTGATTTTTCAAACAACAATCTATCTGGTGTCATTCCCAAGACACTTTCAGGGTGCAGAAATCTATTTAATCTTGATCTTTCAGGCAACAATATCTCAGGTCCTATTCCAGAAAAGGCTTTCAATCGCATGGACTTACTTCAAAGCTTGAACCTTTCAATGAACCAATTAGATGGAGAAATCCCCGAGACATTGTCAAAGCTCCAGCATCGTTTCTTGGATCTTTCTCATAATGACTTGAAGGGATCTATCTCTGATAATTTTGCCAACCTCTCCAATCTAAAGCTTCTCAACCTTTCTTTTAACCAACTTGAAGGTCAAGTTCCATCAAACGGAATATTCTCACATATAGATGCAGCTGCATTGATAGGAAACCCTGCTCTTTGTGGAACCAAATTTCTGATGCCATGCAGGGAAACAACTAAGAGATCTCATTCATTATCCAGGAAGAGCATAATTATTATTGCCTCACTTGGATCGGTTGCTGTCCTCCTAATTTTGGTATTGGTGACTCTATTTCTCATACGACAGGCCAGATCACGTCGTTCTAACAAGCTTGAGAATCATGGAATACCAAACTACACATCGGCTTTGACACCTGAAAGATTTGATAGAAAGGAGCTAGAAAATGCTACTAGTTCTTTCAGCTCAGATAACATCATTGGAGCTAGCAATTTGAGCACTGTCTATAAGGGTCAATTGGGAGACGGCAAGAAAGTGGCAATAAAAAAACTGAACTTGGACTATTCTGCAGAATCTGACAAACTTTTCAAGAGAGAAATAAGCACCTTGAGCCAACTAAGGCATAGGAATTTGGTCAAGGTAGTGGGTTATGCTTGGGAGAGTAGGAAAATAAAGGCTCTAGTTTTGGAGTACATGCAGAATGGCAATTTGGATAGCATAATACATGAAGAAGGGATGGATCGATCTAGATGGACATTATCTGAAAGGCTCAACGTTTTCATGTCTGCTGCTGATGCATTGGGTTACTTGCACTCTGGTTATGATATTCCAATTGTGCATTGTGATTTAAAGCCTTCCAATATTCTTTTGGATGGAGACTGGGTGGCCCATGTGAGTGATTTTGGGACAGCTAGAATGCTTGGTCTCCATTTGCAAGATGGTGCTTCTGTGTCCTCGTCAGCAGCTTTCCAAGGCACCGTTGGTTATTTGGCTCCAGAGCTTGCGTACATGAGG 3153 0.4028 MPPKISLTILIVLFISISNILSNAESSSLEVEIEALKAFKSSITHDPNGALADWVDTTHHCNWSGIACDPSQHVTSLSQVGQKLQGKISPFLGNLSGLQILDLTSNSFSGLIPPQLSFCSQLSQLVLFNNSLWGPIPSELGNLKGLQYLDLGNNNLNGSLPESLFNCTSLLGIAFNSNNLDGKIPSNIGNLVNVTLVAGFTNKFVGSIPPSIGKLRALQSLDFSQNQLSGGIPREIGNLGNLEYLVLFENSLVXKIPSELGQCMKLVNLELYTNQLSGSIPFELGNLVHLETLRIYGNNFTSTIPSSIFQLKLLTNLGLSQNRLEGIISPEIGSLKSLKVLTLHSNKFTGQIPPSITNLTNLTYLSMSQNLLSGRLPSNIGVLHNLKFLVLHANRFHGHIPPSITNCTSMVNVSLAFNSLNGNIPEGFSRMPNLTFLSFASNKMSGEIPDDLFNCSNLRTLSLAENYFSGMLKPIIQNLFNLRMLQLNLNSFTGPIPLEIGNLNQLXTLSLSDNRFSGHIPLELSNLSLLQGLYLHGNALEGTIPNQFFELNQLTELELHENKLVGQIPKAFSKLKMLSYLDLHGNMFNGSIPRELRQLSQLLMLDLSQNHLTGSIPGDVIVYFRGMQLYLNLSHNHFIGSIPEELGMMEMVQAIDFSNNNLSGVIPKTLSGCRNLFNLDLSGNNISGPIPEKAFNRMDLLQSLNLSMNQLDGEIPETLSKLQHLXFLDLSHNDLKGSISDNFANLSNLKLLNLSFNQLEGQVPSNGIFSHIDAAALIGNPALCGTKFLMPCRETTKRSHSLSRKSIIIIASLGSVAVLLILVLVTLFLIRQARSRRSNKLENHGIPNYTSALTPERFDRKELENATSSFSSDNIIGASNLSTVYKGQLGDGKKVAIKKLNLDYFXAESDKLFKREISTLSQLRHRNLVKVVGYAWESRKIKALVLEYMQNGNLDSIIHEEGMDRSRWTLSERLNVFMSAADALGYLHSGYDIPIVHCDLKPSNILLDGDWVAHVSDFGTARMLGLHLQDGASVSSSAAFQGTVGYLAPELAYMR 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1541g00001 1055 SUPERFAMILY RNI-like 73 396 - -
Pral1541g00001 1055 SUPERFAMILY L domain-like 375 471 - -
Pral1541g00001 1055 Gene3D Ribonuclease Inhibitor 193 265 IPR032675 -
Pral1541g00001 1055 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Pral1541g00001 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672|GO:0006468
Pral1541g00001 1055 Gene3D Transferase(Phosphotransferase) domain 1 949 1055 - -
Pral1541g00001 1055 Gene3D Ribonuclease Inhibitor 267 381 IPR032675 -
Pral1541g00001 1055 Gene3D Ribonuclease Inhibitor 382 621 IPR032675 -
Pral1541g00001 1055 Pfam Leucine Rich Repeat 98 119 IPR001611 GO:0005515
Pral1541g00001 1055 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Pral1541g00001 1055 Pfam Leucine rich repeat 690 735 IPR001611 GO:0005515
Pral1541g00001 1055 Pfam Leucine rich repeat 631 686 IPR001611 GO:0005515
Pral1541g00001 1055 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Pral1541g00001 1055 ProSiteProfiles Protein kinase domain profile. 870 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1541g00001 1055 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 622 796 - -
Pral1541g00001 1055 SUPERFAMILY Protein kinase-like (PK-like) 849 1054 IPR011009 -
Pral1541g00001 1055 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 183 281 - -
Pral1541g00001 1055 SUPERFAMILY L domain-like 472 802 - -
Pral1541g00001 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 433 1053 - -
Pral1541g00001 1055 Gene3D Ribonuclease Inhibitor 627 801 IPR032675 -
Pral1541g00001 1055 Pfam Protein kinase domain 872 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1541g00001 1055 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 29 182 - -
Pral1541g00001 1055 FunFam Leucine-rich repeat receptor-like protein kinase TDR 357 621 - -
Pral1541g00001 1055 SMART LRR_sd22_2 359 382 - -
Pral1541g00001 1055 SMART LRR_sd22_2 722 745 - -
Pral1541g00001 1055 SMART LRR_sd22_2 551 583 - -
Pral1541g00001 1055 SMART LRR_sd22_2 143 175 - -
Pral1541g00001 1055 SMART LRR_sd22_2 215 241 - -
Pral1541g00001 1055 PRINTS Leucine-rich repeat signature 746 759 - -
Pral1541g00001 1055 PRINTS Leucine-rich repeat signature 602 615 - -
Pral1541g00001 1055 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 830 948 - -
Pral1541g00001 1055 SMART serkin_6 870 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1541g00001 1055 Gene3D Phosphorylase Kinase; domain 1 831 948 - -
Pral1541g00001 1055 SMART LRR_typ_2 551 574 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 95 119 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 239 263 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 335 359 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 431 455 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 383 407 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 722 745 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 746 771 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 599 623 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 143 167 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 698 721 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 503 527 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 649 672 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 575 598 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 287 311 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 673 697 IPR003591 -
Pral1541g00001 1055 SMART LRR_typ_2 215 238 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1541g00001 Pral-Chr1541 8 3716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1541g00001 28 1055 Receptor kinase-like Gene Family AT5G46330 54.062 0.0 1034
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral1541g00001 Pkinase 2.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1541g00001 K13420 - gmx:100817960 1404.81