Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1540g00001 ATGTCTGGCAGAAGATCTCGTTCCGGACAGTCCACAGAGATCAGTGATGACCAGATCAACGATCTCGTCTCCAAGTTACGACGCCTTATTCCCGAACTCCAACCCACTCCCTCCCACAAGGTATCGGCGGCGAAGGTGTTGAAGGAGACCTGCAACTACATAAAGAACTTGCACAGAGAAGTTGATGGCCTAAGTGACCGCTTATCTGAGCTTTTGTCCTCCACTGACTCCGACAGTCCAGAAGCTGCCATTCTTAGGAGCTTGCTTATGTAA 273 0.5018 MSGRRSRSGQSTEISDDQINDLVSKLRRLIPELQPTPSHKVSAAKVLKETCNYIKNLHREVDGLSDRLSELLSSTDSDSPEAAILRSLLM 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1540g00001 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 3 57 IPR011598 GO:0046983
Pral1540g00001 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 75 IPR036638 GO:0046983
Pral1540g00001 90 Gene3D - 10 86 IPR036638 GO:0046983
Pral1540g00001 90 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pral1540g00001 90 Pfam Helix-loop-helix DNA-binding domain 17 57 IPR011598 GO:0046983
Pral1540g00001 90 CDD bHLH_AtPRE_like 14 74 - -
Pral1540g00001 90 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1540g00001 Pral-Chr1540 30380 31076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1540g00001 14 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 67.949 1.76e-31 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1540g00001 HLH 5.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1540g00001 - - ming:122065575 114.39