Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1528g00005 ATGAATAAGATATTCCTGCCCGGGGTTGCACTTATCCTGGTCGTAGGTTGTGCTGTCGGGACTATTCTTGTCGTCAGACAAAGCAACAGTGGTGGCAGCGGTGGTGATCAGTTGGCCTCCCATAACAAGGCCGTGACGGCGATATGCCAAGGCTCCGACAACCAGAAGGAGTGCGAAGACACTCTGGGGTCCGTCAACTCGTCGGACCCGAAAGAATACATCACGACGGCGGTGGCGAAAGTGATGCAAAAGGTGATAGGTGCCGCTAACATGACCGACAAGCTCGCCGTCGAACATGGCTCCGGCGACAAAGGCGTTAAGATGGCTATTGATGATTGCCAGGACCTGTTGCAGTCAGCCATTGATTCACTCGAGGCTTCAAATGCCATGCTCAAAGGCGACGATATTAGAAGCATCGAGAACAGAACTGACGACGTCAAGAACTGGTTGGCCATGGTGTTATCCTTCCAGCAATCATGCTACGACGGGTTTGAGGCAGGCGGCGGCGAGGAAAAGATAAGAGATACACTGCACACACAGGGTGGCCTGGACGACATACAGAAGCTTACCGGAGTGGCGCTTGATGTTCTCGCCGGCCTCAACAATCTGCTTTCTGCATTCAACTTGGATTTGACAGTGAAGGCTCCGTCTCGTCGTCTCCTGGAAGAAGAAGATCACAGTTGGTTGTCTGAAGCTGATCGCAAGCTCTTGGATGCTGCCAACCCTCAACCCAACGCAGTGGTTGCGAAAGATGGAAGTGGTCAATATAAAACCATCACCGACGCTCTTAATGCATACCCAAAGAACCACCAAGGCAGATTCATCATCTACGTCAAAGCTGGAACTTATAACGAGTACCCTCTCGTTGACAAGAAAAAGCCGAATGTCTACATGTACGGAGACGGCGCTACAAAAACCATCGTCACTGGAAACAGATGCGTGGAGCCCAAGAAGGAATGGAGGACCTTCAACAGTGCCACCTTCGCCATTGTTGGAGACATGTTCATTGCCAAGGGAATAGGATTCGATAACACGGCTGGTTCTATTGGACACCAAGCAGTGGCGGTTCGGACACAAGCAGCCCACGCGGCCTTTTTCCAGTGCGCCTTCCGTGGTTTCCAAGACACCTTGTACGTGCAGGCAGGGATTCAGTTGTTCCGCGAGTGTGAAATCACAGGCACCATCGACTTCATTTTCGGCGCATCCAGAACTCTGATACAGAAATCAAAAATCATTCTGAGGAAGCCAATGGAGAACCAACAGGACATAGTGGTAGCAGACGGCTCCATAAACCCCAAGGCAGGGACTGGGGTTGTGATTCAGAACTGTGACATCTCTGCAGAGCCGGGGCTTGACAAGAACGCGAATCCTTGCTACTTGGCCAGGCCATGGAAGGCCTACTCTAAGGCCATCTTCATGGAAAGCACTCTGGGTGATATTATTCACCCAGATGGATATCTTCCTTGGACTGGGGATATGTACCTAAAAACATGTTACTTCGCTGAGTATGCCAACACTGGACCTGGTTTTAGCCCCAACACCAGGGTCAAGTGGGGTCGAGGCCAGCTTACAAAGGATCAAGCTGCTGCATATACTGCTACCCGATATCTTGAGGGTATGGGCCAGCCATGGTTGGCTGCCACTGGTGTTCCTTTCGATCCCACCTTCACCAAAGCTTAG 1680 0.5137 MNKIFLPGVALILVVGCAVGTILVVRQSNSGGSGGDQLASHNKAVTAICQGSDNQKECEDTLGSVNSSDPKEYITTAVAKVMQKVIGAANMTDKLAVEHGSGDKGVKMAIDDCQDLLQSAIDSLEASNAMLKGDDIRSIENRTDDVKNWLAMVLSFQQSCYDGFEAGGGEEKIRDTLHTQGGLDDIQKLTGVALDVLAGLNNLLSAFNLDLTVKAPSRRLLEEEDHSWLSEADRKLLDAANPQPNAVVAKDGSGQYKTITDALNAYPKNHQGRFIIYVKAGTYNEYPLVDKKKPNVYMYGDGATKTIVTGNRCVEPKKEWRTFNSATFAIVGDMFIAKGIGFDNTAGSIGHQAVAVRTQAAHAAFFQCAFRGFQDTLYVQAGIQLFRECEITGTIDFIFGASRTLIQKSKIILRKPMENQQDIVVADGSINPKAGTGVVIQNCDISAEPGLDKNANPCYLARPWKAYSKAIFMESTLGDIIHPDGYLPWTGDMYLKTCYFAEYANTGPGFSPNTRVKWGRGQLTKDQAAAYTATRYLEGMGQPWLAATGVPFDPTFTKA 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1528g00005 559 Pfam Pectinesterase 245 539 IPR000070 GO:0030599|GO:0042545
Pral1528g00005 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 178 IPR035513 -
Pral1528g00005 559 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Pral1528g00005 559 PANTHER PECTINESTERASE 17 546 - -
Pral1528g00005 559 CDD PMEI-like_3 47 200 - -
Pral1528g00005 559 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Pral1528g00005 559 Pfam Plant invertase/pectin methylesterase inhibitor 44 195 IPR006501 GO:0004857
Pral1528g00005 559 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Pral1528g00005 559 SMART PMEI_2 40 196 IPR006501 GO:0004857
Pral1528g00005 559 NCBIfam pectinesterase inhibitor domain 33 171 IPR006501 GO:0004857
Pral1528g00005 559 FunFam Pectinesterase 4 242 556 - -
Pral1528g00005 559 Gene3D - 239 556 IPR012334 -
Pral1528g00005 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 201 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1528g00005 Pral-Chr1528 35806 37567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1528g00005 4 552 Carbohydrate Esterase AT3G05610 37.433 5.84e-121 370