Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1522g00001 ATGGGGAGGCACTCTTGCTGCCACAAGCAAAAGCTTCGCAAGGGTCTCTGGTCCCCTGATGAGGATGAGAAATTGCTCAGGCATATCACTAAGTATGGCCATGGCTGCTGGAGCTCTGTTCCTAAGCAAGCAGGCTTGCAGAGATGTGGAAAGAGCTGTAGGCTGAGGTGGATCAATTACCTGAGGCCTGATTTGAAGAGAGGCACATTCTCACAAGAAGAGGAGAACCTCATCATTGAGCTTCATGCAGTATTAGGGAATAGATGGTCGCAAATTGCAGCACAGCTGCCAGGAAGAACGGATAATGAAATAAAGAATCTGTGGAATTCATGCCTCAAGAAGAAGCTGAGGCAACAAGGGATAGACCCTGTGACCCATAAACCACTGTCGGAGATTGAGAATGGAGATCAGGACAAAGATGGAGAGAAAGTTGCAGCAGTTAGTTCCAGTGAATTGAACCTCCTGAAATCAGAAAGCTCCAGGTCCGATGGAGCTTCCTACGAGCACAAACCAGGTTCAAGTATTGCCCATAAAGCCTATGCACACGACATGGAGGGTTCTTCTTCTACCTCCAAGATTAACACCAGAAGCAACACTAATTTCATCCCCGATTGTTCCAGTAAAGAGTTGTTACTGGACAGCAGGTTCATCAACAGTCACCAGGAAATCTACACCACTTCAGATTTCATGACGAATTTCCCTCTTCAAATGACCTATACGAATCCATCCACTGACTCTTCTCGTTGGTTCACTCAAACTGGAGGAAGATCATTTGATATAAATACTGAATTTACCTCCAGTACCATGTCCACTGCCTTTCCACTTTCAACCTCCTCATTCCTCCCTACTTCCGTCTGCTACAAGCCTTCTCTCCCCGTTCCATCTGAGGATATCTCTACTGGTTCCTTCCCTGTGAATGAACCCCGGTACTGGGAAGCCAGTGCTTCCAACCATAGCAATAGAAACGGCCCCTTGAACTTGCAGAACAGTATTGTTTCTTGGGGATTGACAGACTGTGGTGGTACTCCTGCTAAGGAGGCTCATCACCAGATTAATATGATGGAGAGTCAGACGGAAGAAGCCAGGTGGGCTGAGTACCTTCATGGTAACCCAATCTTAATGCTGGCTGCTGTACAGAATCAAGGTTCAGAATCCTTATGCAACGATATAAGGCCAGCCTCACATTTGGTACCGGAGTCTTTAGGAGCTATTTTGCCTTATCATCACAAGCAGCAAGATCATCAAGCTTCTGCAATATTCTCAAAGGACATCCAGAAGCTCACTGCAGCTTTCGGACACATATAG 1305 0.4644 MGRHSCCHKQKLRKGLWSPDEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQQGIDPVTHKPLSEIENGDQDKDGEKVAAVSSSELNLLKSESSRSDGASYEHKPGSSIAHKAYAHDMEGSSSTSKINTRSNTNFIPDCSSKELLLDSRFINSHQEIYTTSDFMTNFPLQMTYTNPSTDSSRWFTQTGGRSFDINTEFTSSTMSTAFPLSTSSFLPTSVCYKPSLPVPSEDISTGSFPVNEPRYWEASASNHSNRNGPLNLQNSIVSWGLTDCGGTPAKEAHHQINMMESQTEEARWAEYLHGNPILMLAAVQNQGSESLCNDIRPASHLVPESLGAILPYHHKQQDHQASAIFSKDIQKLTAAFGHI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1522g00001 434 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral1522g00001 434 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral1522g00001 434 Gene3D - 11 67 - -
Pral1522g00001 434 Gene3D - 68 143 - -
Pral1522g00001 434 CDD SANT 17 61 IPR001005 -
Pral1522g00001 434 PANTHER MYB DOMAIN PROTEIN 55 1 346 - -
Pral1522g00001 434 FunFam MYB transcription factor 68 140 - -
Pral1522g00001 434 FunFam Myb transcription factor 11 67 - -
Pral1522g00001 434 SMART sant 66 114 IPR001005 -
Pral1522g00001 434 SMART sant 13 63 IPR001005 -
Pral1522g00001 434 MobiDBLite consensus disorder prediction 129 145 - -
Pral1522g00001 434 MobiDBLite consensus disorder prediction 122 147 - -
Pral1522g00001 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral1522g00001 434 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral1522g00001 434 CDD SANT 69 109 IPR001005 -
Pral1522g00001 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral1522g00001 434 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral1522g00001 434 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1522g00001 Pral-Chr1522 8021 10992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1522g00001 1 139 MYB Transcription Factor Family AT4G01680 91.367 2.95e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1522g00001 Myb_DNA-binding 6.8e-14 CL0123