Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1514g00006 ATGGTGGACGGAGGAAAGGTACGAACCGAAGACGGAGGCGCTGAAAGCCAGAAACTTGGAGGTTGTGGGCCTCACAACACATGGCCCAATAAACATGTTAGCCCAGCTTTGAGGGTTAGCGAAGTTCTTGCTCGATCTGGTTTATCATGGCTTCAGTGGGATCATCCTATTGGTGCTACAGATGCAATCAGACTCGTACTCACTCTCCTTTCCATCGATTCCCGTCGCCATCAGTGTACGTCGACGACGAGTCTAGCTCCGAGCAAGGAGCTAGCCCTAGAATCCGCCGTGGCCCGAGGAAACGCAGGCGATCGATCCCCTTTTAACCCAGTTATTGTCCTCAGTGGACCCGCCGATGGCGGTGGCGGTGGAAATGAAGGGGTTGGTATTGAAAGAGGGAACTTTGAGCTTTATTACAATGAAGGTACAGGTTCGGGTCTTCGGCCACTTCCTGCAAGCGTCACTGATTTCTTAATGGGTGCTGGATTTGACCACCTTCTTGACCAGTTGACTCATTTAGAAGTCACGGGAATCGGACGTTTACATCAAACTCCAGCATCAAAATCTGCAATTGAATCGATGCCCATAGTCAAGATTGTTGCCACACATGTTTCGGCGGAATCACATTGTGCAGTTTGTAAGGAACCCTTCGAGCTTGACTCGGATGCTCGTGAAATGCCTTGTAAGCACATTTACCATTCCGATTGTATCCTTCCATGGCTTTCAATTCGTAATTCATGTCCAGTTTGTCGCCATGAGTTACCTACTGAGATGCGTGGGAGTAGTAGTGGCAGAAACTCTCCCGTATCTGACGGTGGAAGGGATGATCATACTGTGGGATTAACTATATGGAGACTACCTGGTGGCGGTTTTGCTGTAGGAAGGTTCACGGGTGGAAGAAGAGCTGCCGAACGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTCAATAGTGTGGGTGTTCCACGGAGGATATCTTGGGAAGCGAGTGTGAGGAGATCAAGGGAGACTCGGGGATTAGGTAGTGCTTTCCGGAACTTCTTCTCACACTTCGGGTGGCTTAGGACTTCCTTCTCTCGTTCTTCCAGAACTGATTCAAATGTGAGCCGAAGAACTCGATCCAATACAATATTATCTAGATTCTCAAGAAGGCGCAACTAG 1167 0.4876 MVDGGKVRTEDGGAESQKLGGCGPHNTWPNKHVSPALRVSEVLARSGLSWLQWDHPIGATDAIRLVLTLLSIDSRRHQCTSTTSLAPSKELALESAVARGNAGDRSPFNPVIVLSGPADGGGGGNEGVGIERGNFELYYNEGTGSGLRPLPASVTDFLMGAGFDHLLDQLTHLEVTGIGRLHQTPASKSAIESMPIVKIVATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTEMRGSSSGRNSPVSDGGRDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSVGVPRRISWEASVRRSRETRGLGSAFRNFFSHFGWLRTSFSRSSRTDSNVSRRTRSNTILSRFSRRRN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1514g00006 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 257 IPR013083 -
Pral1514g00006 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 255 - -
Pral1514g00006 388 MobiDBLite consensus disorder prediction 254 274 - -
Pral1514g00006 388 Pfam Ring finger domain 209 251 IPR001841 -
Pral1514g00006 388 MobiDBLite consensus disorder prediction 1 27 - -
Pral1514g00006 388 Pfam Protein of unknown function (DUF1117) 279 383 IPR010543 -
Pral1514g00006 388 FunFam E3 ubiquitin-protein ligase RING1-like 172 257 - -
Pral1514g00006 388 SMART ring_2 210 250 IPR001841 -
Pral1514g00006 388 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Pral1514g00006 388 SUPERFAMILY RING/U-box 190 257 - -
Pral1514g00006 388 CDD RING-H2_RNF126-like 210 251 - -
Pral1514g00006 388 MobiDBLite consensus disorder prediction 365 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1514g00006 Pral-Chr1514 33893 37515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1514g00006 149 265 C3H Transcription Factor Family AT5G01980 44.444 6.28e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1514g00006 K11982 - qsa:O6P43_016745 437.958