Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1513g00001 ATGGAGGATGAAACTTTCTTATCGATCAGTTCAGTTCCTAGTTTTGCTCAAGGCCTTAAGATTTTGCTGGTTCATAATGACACCTTGTCCATCATCAACTTGTCATCTATGCTTGAGAAATACTCATTCAGAGCATATAACAGCGAAAGGATTGATTATGCAGTTACTGTTACCGATGAAGCAAAAGCAGCTGTGTCAATGATTTGTGATCCTGAAGAAAGCCAATTCAACCTGGTAATGGCTAAAGATAACATGCCTGACATGGATATTCTTTCATTTCTGCACATCATGCTTGATAAGTACATCCCTGTCATCTTTATCTGTTCCGGAGAATATGATGATGTAACATGGAAAGCATTGGCTGAAGGCTCATGTTTTTTCCTGGAAGAACCAATCCTTTTCCAGGATCTCAAATATGTGTGGCAGCATGTGTATCACACAAGAGTTAACTTGGCCAAGAAAACTGATAAAGAAAATTGTGTTAACAAGGTTCATGGAACTCTTGATGATAGAAAATGCCTGGGACAAGAAAAGAGAAAAAGGTTGGAGATGAACTTTGACAGCAATCACCTTACTGCTTTTATGGAACAGGATGAAATTGAGGATACAGAAAGAAAAGAAAACTATGATGAGCATGCCGAGAAAAGGCCTCGTATTGTTTGGACTCCGGAGCTGCATCAGAAGTTCTTGGATGCCATTAATGTTTTGAGTGACAGGAATAATATTCGCCCAAAAGCAATACTAGAACAGATGAATGTGCCTAACCTCACAGCTCGCCAGATTTCAAGTCATCTTCAGAAATACAGAACTCAAGAATTGATAAGCCAGCAGGCTTGCATTTCTGGATTCACTCCGATGGGAACATTCTCAAATTTTGATGGCAGATTCCAGTCTTCCTTGCCATTTCAGAGCCAAGGTTATCCAGGTTTTCCTATATCAATTGCAGCAGTTGGTGGGAGCCAAAATCAAAGCCAGTGTTCAATGATTTTCACTGAAACTCAAGGATTAGAAATGCCACAAATGGAAGAAGTGTCACTAATTCCAGATGAATTTGCAACAGCATTGAGCAATTATGGAAGCCAAAACCGAGAAGCTGAAGTGAGACAACCTATACCAGATGCTTCAATGGATCAAAATCAACCCATGAGAGCACATGATCCTATGAAAATGCTTGAGGAAGATTATGACGAGCATGAGTATTCTCAAAATGGAGTACTTTCACATCAAATTGATCAATACTGTGAGATGCTAAGGAACACTCTTTAA 1266 0.3942 MEDETFLSISSVPSFAQGLKILLVHNDTLSIINLSSMLEKYSFRAYNSERIDYAVTVTDEAKAAVSMICDPEESQFNLVMAKDNMPDMDILSFLHIMLDKYIPVIFICSGEYDDVTWKALAEGSCFFLEEPILFQDLKYVWQHVYHTRVNLAKKTDKENCVNKVHGTLDDRKCLGQEKRKRLEMNFDSNHLTAFMEQDEIEDTERKENYDEHAEKRPRIVWTPELHQKFLDAINVLSDRNNIRPKAILEQMNVPNLTARQISSHLQKYRTQELISQQACISGFTPMGTFSNFDGRFQSSLPFQSQGYPGFPISIAAVGGSQNQSQCSMIFTETQGLEMPQMEEVSLIPDEFATALSNYGSQNREAEVRQPIPDASMDQNQPMRAHDPMKMLEEDYDEHEYSQNGVLSHQIDQYCEMLRNTL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1513g00001 421 SUPERFAMILY Homeodomain-like 214 270 IPR009057 -
Pral1513g00001 421 PANTHER - 11 271 - -
Pral1513g00001 421 Pfam Myb-like DNA-binding domain 221 269 IPR001005 -
Pral1513g00001 421 Gene3D - 15 158 - -
Pral1513g00001 421 Gene3D - 212 273 - -
Pral1513g00001 421 ProSiteProfiles Response regulatory domain profile. 20 145 IPR001789 GO:0000160
Pral1513g00001 421 NCBIfam myb-like DNA-binding domain, SHAQKYF class 217 271 IPR006447 GO:0003677
Pral1513g00001 421 SUPERFAMILY CheY-like 17 148 IPR011006 -
Pral1513g00001 421 FunFam Two-component response regulator 212 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1513g00001 Pral-Chr1513 16114 20960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1513g00001 12 271 Response Regulator Gene Family AT1G68210 34.266 2.85e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral1513g00001 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1513g00001 - - pcin:129311678 590.112