Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1509g00002 ATGGATTCAAACGCTTCAAGCTTTCTTCTGAACTCTTCAACTTTTCACCCAGATTTCTATCAAGGCAAAGAGGATGATGAAGATGGCATGATTGATCTGGGACTTAGCCTCAGAACTGTCCAGCCTGAAGCTTATCATTCATCTAGCAACTTTTTAAGCTTGTGGAGATATGATGACGACCTTATGGATTGGCCACAGCCTAATCTCAACCTCAAGAGCTCAAGCACAATGCATTCTAAATCTGTTCCAGAAAACTTTGATGAAGAAATAGAAGGTGTCCAAAGCAATGATAGGTGGGCTTATGTTAAGGTCAACATGGACGGTGTTACAGTAGGCAGAAAAATCTGTGTCCTTGATCATGAAGGCTACCCAAGCCTTGCAAACCAGTTAGAAAACATGTTTGGAAGCAAATCTGTTTCTGGTTTGAAACTGTTCCAATCTGAGTCAGAATATTTACTGTTCTACAAAGACAGAGAAGATCATTGGAGAACCGTAGGTGATGTCCCATGGAAAGAATTTGTAGAAAGCGTGAAGAGGTTGAGGATCACAAGAAAGAATGCAGCCTAA 567 0.4092 MDSNASSFLLNSSTFHPDFYQGKEDDEDGMIDLGLSLRTVQPEAYHSSSNFLSLWRYDDDLMDWPQPNLNLKSSSTMHSKSVPENFDEEIEGVQSNDRWAYVKVNMDGVTVGRKICVLDHEGYPSLANQLENMFGSKSVSGLKLFQSESEYLLFYKDREDHWRTVGDVPWKEFVESVKRLRITRKNAA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1509g00002 188 SUPERFAMILY CAD & PB1 domains 98 182 - -
Pral1509g00002 188 Pfam AUX/IAA family 83 185 IPR033389 -
Pral1509g00002 188 Gene3D - 94 188 - -
Pral1509g00002 188 ProSiteProfiles PB1 domain profile. 99 187 IPR000270 GO:0005515
Pral1509g00002 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 59 187 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1509g00002 Pral-Chr1509 21269 22427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1509g00002 94 182 B3 DNA Binding Superfamily AT1G59750 37.079 2.73e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral1509g00002 AUX_IAA 4.9e-23 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1509g00002 K14484 - gmx:100777024 282.337