Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1508g00005 ATGGATGCTGTTGATTTGATTCCCACGGTTTCTTGTCCTTCTCTTATCATTGGTGCTCCTCCTGCAATCAAGTATGACGTGTTTCTTAGCTTCAGAGGGGAAGACACTCGCCACACCTTTTCTAGTTATCTCTATGAAGCACTTGACCAAGCGGGCCTTCATACTTTTATGGATCACAAGCTCCACAAAGGAGATCATATCTCACCAATTCTTCTGAAAACAATAGAGAAATCAGAGATATCTTTGATCATTTTCTCCAAGGATTATGCTTCTTCAACATGGTGTATGGATGAGCTCGTTCACATTATGAAATGTAAAGATAAGTACGGAAGGCTTGTCGTCCCAATTTTCTACAACGTAGATCCATCAAATATTCGGAAACAGGATGGGAGATTTGGCGATGGATTTGCCAAGCTCAAGCAGAGATTTAAGCATGACCAAAAAAGAGTGCAGGAGTGGAAAAATGATTTGATCAAATCGGCAAGTCTATCTGGGTGGGATTCAGAGAATTTCAGGCCTGAATCTGAACTTGTCAAAAAGATTGTCAAAGATGTTTTGAGCAAGCTGAATCGTAGGTCATCCTTTCATGTGGATGGATTAGTTGGGATTGATCATCAGATACAGAAAGTTGAAGAGCTGCTAACTGAAGCTCGCATTGTGGGAATATGGGGTATGGGTGGTATAGGCAAGACCACTCTTGCTAGAGCGGTCTTTGAGAGGTTGACAGCTGATTTTGAATCTTTCTACTTTGTTGAAGATGTCAAACAAAAGCTGGCAAAGAATAGATCGAAATATATCAAAGAATGCCTCAAAAAGTTATTACATGACGACGATATTAACCCTTACAATTTAACATACGCTTCTGTGAGAAGGAGGCTTGAGCAGAAAAAAATTCTTTTGGTACTTGATGATGTGGACAATTCTAGAATGGCTGAAGATTTAATCAAAGCATGTGATTGGTTTGGGGAAGGAAGTAGAATTATTATCACATCAAGAGATATGCAAGTGCTTAAAAATGCTTCTGATTCTGCATCTCCTGCAACATATCACGTTCTGGAATTGAATCCGCATGATGCCCTTCATCTCTTTAGCTTGAACGCTTTCAAGCAAAATCAACCTTTCGAAAACTACTTGGAGTTATCAAAGTGGGTAGTGGATTATTGTGAAGGAAATCCATTAGCTCTGAAAGTGTTGGGTCGCTATCTTCATGGTAGAGGAAAAGAAGAGTGGGAAAGTGCTCTGGCGAAACTAAATCAAACTCCTGACTATGACATTTTGAATGTGCTAAAATTGAGTTTTGATGGACTTGATGACACACAGAAGAATAGGATAGATGTGGTAATATTGGGATGCATGCTCTATTAG 1365 0.3956 MDAVDLIPTVSCPSLIIGAPPAIKYDVFLSFRGEDTRHTFSSYLYEALDQAGLHTFMDHKLHKGDHISPILLKTIEKSEISLIIFSKDYASSTWCMDELVHIMKCKDKYGRLVVPIFYNVDPSNIRKQDGRFGDGFAKLKQRFKHDQKRVQEWKNDLIKSASLSGWDSENFRPESELVKKIVKDVLSKLNRRSSFHVDGLVGIDHQIQKVEELLTEARIVGIWGMGGIGKTTLARAVFERLTADFESFYFVEDVKQKLAKNRSKYIKECLKKLLHDDDINPYNLTYASVRRRLEQKKILLVLDDVDNSRMAEDLIKACDWFGEGSRIIITSRDMQVLKNASDSASPATYHVLELNPHDALHLFSLNAFKQNQPFENYLELSKWVVDYCEGNPLALKVLGRYLHGRGKEEWESALAKLNQTPDYDILNVLKLSFDGLDDTQKNRIDVVILGCMLY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1508g00005 454 Gene3D - 22 186 IPR035897 -
Pral1508g00005 454 PRINTS Disease resistance protein signature 292 306 - -
Pral1508g00005 454 PRINTS Disease resistance protein signature 219 234 - -
Pral1508g00005 454 PRINTS Disease resistance protein signature 388 402 - -
Pral1508g00005 454 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 446 IPR044974 GO:0006952
Pral1508g00005 454 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 166 IPR035897 -
Pral1508g00005 454 ProSiteProfiles TIR domain profile. 23 189 IPR000157 GO:0007165
Pral1508g00005 454 SMART till_3 24 163 IPR000157 GO:0007165
Pral1508g00005 454 Gene3D - 353 437 IPR042197 -
Pral1508g00005 454 Pfam NB-ARC domain 207 420 IPR002182 GO:0043531
Pral1508g00005 454 Pfam TIR domain 24 192 IPR000157 GO:0007165
Pral1508g00005 454 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 191 - -
Pral1508g00005 454 Gene3D - 187 345 IPR027417 -
Pral1508g00005 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 442 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1508g00005 Pral-Chr1508 33924 35586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1508g00005 201 442 WRKY Transcription Factor Family AT5G45050 36.290 2.59e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1508g00005 - - pcin:129286024 584.334