Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1501g00018 ATGACGACTGATACCCTTCGTGGGAACAAGACATCGCGTAAGAGACGAAGAAGCGAGAGCGACTCTGTCATAGGCACTCTTGAGAAGTGGAAGAAGTACAACAGTGAGCTTGATTTTGTTAAAAATGGAGCAAAGAAAGCGAGTCTCAGAGTTCCAGCAAAAGGCTCGAGAAAGGGTTGCATGAGAGGCAAAGGTGGGCCTCAAAACTCAGACTGCAATTACAGAGGAGTGAGGCAGAGGATTTGGGGCAAATGGGTGGCAGAAATTCGTGAACCCATTACTGGAAATCATACTACTGTGGGAAACAAGAAACCGAATCGCTTATGGCTCGGCACTTTCTCTACTGCACTTGAAGCTGCCCTTGCTTATGACGAAGCAGCCAGAGCCATGTACGGTCCTTGTGCTCGGCTGAACTTTCCTGATTATAACATGGAAGGAGAAGAAGATGAAGAACCCACATGCTCTAATGAGGAAACAGAGAAGAAACACGAGGCTGTTCTGGTGAAGACCGAAGAAGAAACAGAGGAGGAATGGAATCCAGGGGCTAGGTATGAGGATTCTGGTGTCATTGAAAGTGAAGCTTCCTTTGGGAAGAAGCAGATGGAGGAAATGACTTCTGATATTCTGGGATTTTGTACATCTGATCCCTCTCAAAATGAGGAATATAAAGCTTCTATAGAGAGAAACTTTGAAGATGAGGAGGGTTTGAACAATTCTGGTTGTGGAAGCTCCATGTTTGAAGAAAAAGGAACTGATGAGTGGCAGAGTGGTCATTTGCCTGTGCGTCTCAATAACATGAAGGAGGCAGACCTGGAAGCGGGTTATTATGACTACAGTTTCTTGAGACCTGATTATGACTTTGGCTTGTTGGAAGAGAAAAACTTACTTGGTATATGGTTTCCGCATTTAGCTTCTTAA 918 0.4477 MTTDTLRGNKTSRKRRRSESDSVIGTLEKWKKYNSELDFVKNGAKKASLRVPAKGSRKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPITGNHTTVGNKKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPDYNMEGEEDEEPTCSNEETEKKHEAVLVKTEEETEEEWNPGARYEDSGVIESEASFGKKQMEEMTSDILGFCTSDPSQNEEYKASIERNFEDEEGLNNSGCGSSMFEEKGTDEWQSGHLPVRLNNMKEADLEAGYYDYSFLRPDYDFGLLEEKNLLGIWFPHLAS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1501g00018 305 Gene3D AP2/ERF domain 73 141 IPR036955 GO:0003700|GO:0006355
Pral1501g00018 305 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Pral1501g00018 305 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Pral1501g00018 305 MobiDBLite consensus disorder prediction 1 22 - -
Pral1501g00018 305 FunFam Ethylene-responsive transcription factor 2 72 141 - -
Pral1501g00018 305 CDD AP2 72 141 IPR001471 GO:0003700|GO:0006355
Pral1501g00018 305 Pfam AP2 domain 72 132 IPR001471 GO:0003700|GO:0006355
Pral1501g00018 305 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677
Pral1501g00018 305 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 221 - -
Pral1501g00018 305 ProSiteProfiles AP2/ERF domain profile. 73 140 IPR001471 GO:0003700|GO:0006355
Pral1501g00018 305 SMART rav1_2 73 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1501g00018 Pral-Chr1501 193827 195481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1501g00018 8 236 AP2-EREBP Transcription Factor Family AT2G40340 38.866 8.46e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral1501g00018 AP2 1.8e-13 CL0081