Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1501g00001 ATGGCGGCCACAAAAACAGTACCAGTAGGAGTCATTCTTGATCTGAACTCAAGACTCGGTAAAATGGTGAACAACAGCCTCGCCCTCGCCGTCGAAAATTACTACCTCGTTCATAACAATACAGCCACCAAGATCACGCTTGTGGTCTGGAATGTTTCTCAGGACAATATCATCATAGCGGCAAACAGAGCTTATCGTCTCATGCATGATGTGAAAGTACGTGCCCTGTTGGGGCCCCAGAATTCAGAGCAAGCAAGGTATATTGTGAGACTTGGTGAGCAATTACAGGTACCTGTCATTTGGTTTCCCATAACTGGTCCATCTCTTTTGCCACCGCCATCTCCATCCTCCATCTACATCGGTCAAGGCCTTAATTGCTATCAGTTCCAAGCCATAGCCGCCAGTCTTAAAGCTCTTGGGTGGCAATCAATCGTCCCCATTTATGAAGAGACTGAATATGGCAGTCATCTTGTTCCATGCCTCACGAATGTCTTGAAAGAGATGGGCATACGAATGGCTAACGTAACTGCCATTGCTTCAAATTCATCAGATCGTGACATTGACGACATTCTCCTCAAGTTAAACAACATGCGAACACATGTATTTCTTGTCCATATGAGCATGGATCTCGGAACAACATTTGTTTTATCTGCACAAAGAAAAGAGATGATGGGTGAAGGATATGCTTGGATACTTACCCAAGAGCTATCTTCTTTGACAGATCCTCAAGTTACAGTCACGAGAAACTTGTATACTGGCCAGGTCCTATCTGGCAGTTTTACTGATTTCTTTGCTTTGAAAAGGTATATGCAAGGTGCATTGGGAGTGAGGCCAATGGATTCTAACAAAACAGATGCGCGTAAGGGGATAGAGAATAATTTCACTGCTAAGTTCGGAGGAGCTAGCCTAACTATCTATGGATGGTGGGCTTATCACACAATCGAAGCATTGGCTATGGCATTAGAGAAGCCAGGCGCAGACAATAATGGCACAAAACTTCGAAGTGAAATTCTGGCTACTAATTTCACAGGCGTGTCAGGGATAAATTTTAATTTAAAAGGAGGACAACTAGATCAATCAGTGCTTGAAGTATACAATGTGGTGGGAACAAGAGAAAGGATCATCGGATCTTGGAACCCCAAAGATGGATTTGTTCAAAATAATAGTAAAAGTGGCGAGGTATCTGGTGATGGATACCAACTAAGTGGTCCTCTGGCACTGTGGCCGGGTGACACATTGGATAAACCACCAAAGTTGAGAATAGGAGTCCCAAGAACAAATTCTTTTCCTGAATTTGTGAATGTGGATAATTCTAGTAAGCTTCTGATTGATGGCTTTGCTATTAATGTGTTCCTAAAAGCTATCGGTGTTTTGCCGTTTCTGTTAAATAATTATGAGTTTGTTCTTTTGCCGAACAAAAATGCAAGCGATACTCCCACAAACTATGATGATCTTCTCTGCAGCCAAATGAAAGACGAGGATCTTGATGCTATAATTGGAGACATCGCAATTGTAACAAAACGCACAAACTGTGTTGATTTCACGTTGCCGTATCTAGATTCAAGTGTAGCAATGGTGGTAAGGGCGAAGGCCTACAGAAGTAAGGGAATCCTCTTCAAACCTTTCGATTGGTCACTATGGTTAATTCTTGGTGGGATTTTTGTGGGCGCAACAATTATCATAATTATGTTAGAAAGAAACAAAACCAACGAAAAAGACAAAACCAATGAAGAAGACAAAACCAAAGAATTTCGCTCCAACCCTTTCCTTGTTTACAAGATGGATGCGATGGAGTTTAAAAGCAAATCTGCAGGATGGATGGTGATACTGACGTCACTCCTATTCATCTTAGTAGTGCAAGTTTACACGGCGAATTTGACTTCAATTTTAACACAAGGAGAGAAGAAAAAGCCTGAATTTAAGGACGAAAATGAGGTTAAAAGTAGCAATGTGTTTGTGGGACATCGAAATGGGTCGTGGGTGAAAGGGCTTCTAATTAACCAAATGGGATTCGACCCGTCTCGATTAAAGCCTCTAGCAACTCGTGAAGAGTACAATTTATCATTGTCAAATGGAATAGTGGGAGCTATTTTTGATGAAACTCCCTATCTCACGCTCTTTCTCTCCAGATATAGATCTGGCTTCATGATGGCAGGACCAATCCATAAAACTGGTGGACTTGCATTTGCATTCCCAAAGAAATCTAGCCTGGCCTTGCATTTCTCGAATGCAATCTTAAAGGTGACTCAAGATGCGGAGCCATATCGTGTGCTGATGGCCAGGAGCTCCTTACCCACCTCCATTGAAGATCTCATTTTTGAAGACCAAAGTGATACTGAGACGACAAGTTTGAAAATAGATAACTTTGGAGGCCTTTACCCCGTCCTAATATCTGTAGTAGCTCTCTTCTTAGGCGTTGCCATTCTGAATCCATCGGTAATTCAATGCTTGCGTACATCATCAGTGATTGAACAGTTGCGTAACAGGAAGCAGGATCCCAAGTTAGCTAATAAGGCTTAA 2520 0.421 MAATKTVPVGVILDLNSRLGKMVNNSLALAVENYYLVHNNTATKITLVVWNVSQDNIIIAANRAYRLMHDVKVRALLGPQNSEQARYIVRLGEQLQVPVIWFPITGPSLLPPPSPSSIYIGQGLNCYQFQAIAASLKALGWQSIVPIYEETEYGSHLVPCLTNVLKEMGIRMANVTAIASNSSDRDIDDILLKLNNMRTHVFLVHMSMDLGTTFVLSAQRKEMMGEGYAWILTQELSSLTDPQVTVTRNLYTGQVLSGSFTDFFALKRYMQGALGVRPMDSNKTDARKGIENNFTAKFGGASLTIYGWWAYHTIEALAMALEKPGADNNGTKLRSEILATNFTGVSGINFNLKGGQLDQSVLEVYNVVGTRERIIGSWNPKDGFVQNNSKSGEVSGDGYQLSGPLALWPGDTLDKPPKLRIGVPRTNSFPEFVNVDNSSKLLIDGFAINVFLKAIGVLPFLLNNYEFVLLPNKNASDTPTNYDDLLCSQMKDEDLDAIIGDIAIVTKRTNCVDFTLPYLDSSVAMVVRAKAYRSKGILFKPFDWSLWLILGGIFVGATIIIIMLERNKTNEKDKTNEEDKTKEFRSNPFLVYKMDAMEFKSKSAGWMVILTSLLFILVVQVYTANLTSILTQGEKKKPEFKDENEVKSSNVFVGHRNGSWVKGLLINQMGFDPSRLKPLATREEYNLSLSNGIVGAIFDETPYLTLFLSRYRSGFMMAGPIHKTGGLAFAFPKKSSLALHFSNAILKVTQDAEPYRVLMARSSLPTSIEDLIFEDQSDTETTSLKIDNFGGLYPVLISVVALFLGVAILNPSVIQCLRTSSVIEQLRNRKQDPKLANKA 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1501g00001 839 Gene3D - 538 658 - -
Pral1501g00001 839 Gene3D - 1 122 - -
Pral1501g00001 839 Gene3D - 415 537 - -
Pral1501g00001 839 SUPERFAMILY Periplasmic binding protein-like I 2 409 IPR028082 -
Pral1501g00001 839 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 8 808 IPR015683 -
Pral1501g00001 839 Pfam Ligand-gated ion channel 753 797 IPR001320 GO:0015276|GO:0016020
Pral1501g00001 839 Gene3D - 127 316 - -
Pral1501g00001 839 Pfam Receptor family ligand binding region 24 368 IPR001828 -
Pral1501g00001 839 SUPERFAMILY Periplasmic binding protein-like II 412 752 - -
Pral1501g00001 839 Pfam Bacterial extracellular solute-binding proteins, family 3 487 752 IPR001638 -
Pral1501g00001 839 SMART GluR_14 420 755 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1501g00001 Pral-Chr1501 2866 7656 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1501g00001 4 809 Ion Channels AT2G29120 31.184 4.07e-109 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1501g00001 K05387 - qsu:111985484 480.715