Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1490g00007 ATGTCAAGCAATGCAATAACTCTCTTTATCTTGCTTCTTAATATCTCCTTGTTTCCATCCGTCTATACTCTGAACCAGGAAGGTCTCTCCCTGCTTTCATGGCTTTCAACATTCAATTCCTCTGATTCTGCTACTTCCTTCTCTTCATGGAATCCAACCGACAAAAGTCCTTGCAAATGGGATTATATAAGGTGTTCCAAAGATGGTTTTGTTTCAGATATTGTAATAACATCTATCAATCTCCGTAGCAGCTTCCCAACGCAACTCCTTTCTTTTGGTCACCTCACCACTCTTGTCATCTCAAATGGAAATCTTACTGGTGAGGTTCCAAGTTCAGTAGGGAACTTGTCGTCTCTGGTTTCTTTGGACCTCAGCTTCAATGCTTTATCAGGAACCATTCCTGCAGAAATGGGGAAGTTAACTAATCTGCAGTGGTTAAAATTAAATTCAAATTCCTTACATGGTGAAATTCCAACAGAAATTGGGAATTGTTCCAAGCTTCGTCAGCTGGAACTGTTTGACAACCAGCTTTCTGGCAAGATTCCTGGAGAGATAGGCCATTTGAAAGATCTAGAAATGTTTCGAGCAGGTGGAAATCAGGGAATCCATGGTGAAATTCCAATGCAGATTTCAAATTGTAAAGCTCTCACTTTTCTGGGTCTTGCAGATACTGGGATTTCAGGGGAGATTCCTTCAAGTATAGGGGAACTTAAGAATCTCAAGACGCTTTCTGTCTACACAGCAAACCTCACAGGTCATATCCCACCAGAGATTCATAATTGTTCAGCCTTGGAGAATTTGTTTCTATATGAAAATCAGCTTTCTGGTAACGTTCCTTGTGAATTGGGCTCCATGAAAAGCCTAAGGAGAGTAATGCTGTGGCAGAACAATTTAACTGGCACCATTCCAGAAAGTCTGGGCAACTGTACAAATCTGATGGTTGTAGATTTTTCTTTGAATTCCTTGGAAGGTGAGCTCCCTGTGACTCTTAGAAATTTGCTCTTATTGGAGGAGCTTCTTCTCTCTGATAATAACATTTCTGGAGAAATACCTTCCTTTATTGGCAATTTTTCCAGACTGAAGCAGCTTGAATTAGATAACAACAGGTTCTCTGGCGAGATTCCACCTGTTATGGGACAACTGAAAGAACTCACCTTGTTCTTTGCTTGGCAGAACCAACTCTATGGAAGCATACCAACAGAACTATCCAACTGTGAGAAACTTGAGGCACTTGATCTCTCACACAATTTCCTCACTGGGTCAATTCCAAGTGCTCTCTTTCATCTAGAGAACTTAACTCAGCTATTGTTGATTTCAAATCGACTCTCAGGTCAACTTCCCCCAGATATTGGCAGCTGCACCAACTTGGTCAGGCTGCGGCTGGGATCAAACACCCTCACCGGTCCAATTCCACCAGAAATAGGTCTTTTAAGCAGATTGAGCTTTCTTGAATTGTCAGATAATCTACTCAATGGAGAAATTCCCAACCAAATTGGCAACTGCAATCAGCTACAAATGCTTGACTTGCACAAGAATCAGCTGCAAGGAGCAATTCCTTCCTCCTTTGAATTCCTACTTGTTCTTAATGTCTTGGATCTTTCTGCAAACAGAATAACTGGAAGTATTCCCCAAAATTTGGGCAAGCTTACATCTTTAAATAAGCTAATGATCAGTGGCAACAGCATTACAGGTTTGATCCCTCAGTCACTGGGCCTTTGTAAGAATTTGCAGTTGCTGGATATTAGCAACAACAGAATCTCTGGTTCCATCCCAGATGAGATCGGACAATTGCAAGGACTGGATATCCTCTTGAACTTGAGTTGGAACACTATAACAGGTCCCATTCCAGAGAGCTTCTCAAATCTCTCAAAACTTTCCAACTTAGACCTCTCCCACAACAAGCTAACAGGCAGCCTCAGAATACTGGGTAGTCTTGACAATTTAGTGTCTTTGAATGTCTCCTACAATAGTTTCACTGGTTCACTTCCAGATACAAAGTTCTTTCATGAACTCCCTGCTGCTGCATTTGCTGGCAACCCTGAGCTCTGCATTAGCAAGTGTGACATGAATCGAAATCACCAAGGCATTAAGTCAGTAAGAAATGTTATTATTTACACTTTTCTTGGTGTTATTTTAACGGCTGTATTTGTGACTTTTGGAGTGATTTTTGCTCTGAGAATTCACGGGGCCACATTTGAGAGGAAATTTGATGAAGAAAGTGAAATGGAATGGACTTTTACTCCATTTCAAAAACTTAACTTCTCCATCAATGACATTGTCACAAAGTTATCAGATTCAAACGTTGTAGGAAAGGGTTGCTCGGGGATTGTTTATCAAGTAGAGACTCCAATGAAGCAGATAATTGCAGTGAAGAAGCTCTGGCCAATAAAGAATGACGAGCCACCAGAGAGAGATTTGTTCTCTGCAGAGGTTCAGACCTTAGGATCAATAAGACATAAAAATATCGTCAGGCTTCTCGGATGCTGTAACAATGGAAGAACAAGATTACTCCTATTTGATTATATCAGCAATGGGAGTTTGTGTGGGTTGCTCCATGAAAAGAGGTTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAGCAGCTCATGGTCTAGAATATCTGCATCATGATTGTATACCTCCAATTGTCCACAGGGACATTAAAGCTAACAACATCCTGGTAGGACCGCAATTTGAAGCTTTCATTGCAGATTTTGGTCTTGCAAAACTGGTGAATTCCTCTGAGTGTTCAAAAGCCTCTGCCATAGTTGCAGGCTCTTATGGGTACATAGCTCCTGAATATGGATACAGCCTAAGGATCACAGAGAAGAGTGATGTGTACAGTTATGGGGTAGTGCTGCTGGAGGTTTTGACGGGAATGGAGCCAACTGATAATAGGATTCCAGAGGGTGCCCACATTGTCACTTGGGTTAACAGGGAAATCAGAGAGAAGAAAAGGGAATTCACATCAATTCTTGACCAGCAACTAGTATTGCAATGTGGTACTAGAACGCCAGAGATGCTTCAAGTTCTAGGGGTGGCTCTCTTGTGCGTAAATCCATCCCCGGAAGAACGACCCACCATGAAAGATGTGACAGCAATGCTCAAGGAGATCAGGCATGAAACTGACAATTTCGAGAAACCAAGTTTTCTCCAAAAGGGGCAGTCACCAATCAAAAAGTCGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCACTAA 3234 0.4171 MSSNAITLFILLLNISLFPSVYTLNQEGLSLLSWLSTFNSSDSATSFSSWNPTDKSPCKWDYIRCSKDGFVSDIVITSINLRSSFPTQLLSFGHLTTLVISNGNLTGEVPSSVGNLSSLVSLDLSFNALSGTIPAEMGKLTNLQWLKLNSNSLHGEIPTEIGNCSKLRQLELFDNQLSGKIPGEIGHLKDLEMFRAGGNQGIHGEIPMQISNCKALTFLGLADTGISGEIPSSIGELKNLKTLSVYTANLTGHIPPEIHNCSALENLFLYENQLSGNVPCELGSMKSLRRVMLWQNNLTGTIPESLGNCTNLMVVDFSLNSLEGELPVTLRNLLLLEELLLSDNNISGEIPSFIGNFSRLKQLELDNNRFSGEIPPVMGQLKELTLFFAWQNQLYGSIPTELSNCEKLEALDLSHNFLTGSIPSALFHLENLTQLLLISNRLSGQLPPDIGSCTNLVRLRLGSNTLTGPIPPEIGLLSRLSFLELSDNLLNGEIPNQIGNCNQLQMLDLHKNQLQGAIPSSFEFLLVLNVLDLSANRITGSIPQNLGKLTSLNKLMISGNSITGLIPQSLGLCKNLQLLDISNNRISGSIPDEIGQLQGLDILLNLSWNTITGPIPESFSNLSKLSNLDLSHNKLTGSLRILGSLDNLVSLNVSYNSFTGSLPDTKFFHELPAAAFAGNPELCISKCDMNRNHQGIKSVRNVIIYTFLGVILTAVFVTFGVIFALRIHGATFERKFDEESEMEWTFTPFQKLNFSINDIVTKLSDSNVVGKGCSGIVYQVETPMKQIIAVKKLWPIKNDEPPERDLFSAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYISNGSLCGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFIADFGLAKLVNSSECSKASAIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPEGAHIVTWVNREIREKKREFTSILDQQLVLQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHETDNFEKPSFLQKGQSPIKKSQFTVQVSPDHVNH 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1490g00007 1077 ProSiteProfiles Protein kinase domain profile. 763 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1490g00007 1077 Pfam Protein kinase domain 766 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1490g00007 1077 Gene3D Ribonuclease Inhibitor 217 324 IPR032675 -
Pral1490g00007 1077 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Pral1490g00007 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Pral1490g00007 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Pral1490g00007 1077 SMART LRR_typ_2 549 572 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 622 644 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 525 548 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 645 678 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 140 164 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 285 309 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 333 357 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 429 453 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 573 597 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 477 501 IPR003591 -
Pral1490g00007 1077 SMART LRR_typ_2 116 139 IPR003591 -
Pral1490g00007 1077 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Pral1490g00007 1077 Gene3D Ribonuclease Inhibitor 424 695 IPR032675 -
Pral1490g00007 1077 Gene3D Phosphorylase Kinase; domain 1 728 841 - -
Pral1490g00007 1077 PANTHER UNNAMED PRODUCT 354 967 - -
Pral1490g00007 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Pral1490g00007 1077 SUPERFAMILY L domain-like 38 395 - -
Pral1490g00007 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Pral1490g00007 1077 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Pral1490g00007 1077 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Pral1490g00007 1077 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Pral1490g00007 1077 Gene3D Ribonuclease Inhibitor 29 138 IPR032675 -
Pral1490g00007 1077 PRINTS Leucine-rich repeat signature 119 132 - -
Pral1490g00007 1077 PRINTS Leucine-rich repeat signature 622 635 - -
Pral1490g00007 1077 Gene3D Transferase(Phosphotransferase) domain 1 842 1058 - -
Pral1490g00007 1077 Pfam Leucine Rich Repeat 407 428 IPR001611 GO:0005515
Pral1490g00007 1077 MobiDBLite consensus disorder prediction 1052 1077 - -
Pral1490g00007 1077 SUPERFAMILY Protein kinase-like (PK-like) 745 1047 IPR011009 -
Pral1490g00007 1077 Gene3D Ribonuclease Inhibitor 139 216 IPR032675 -
Pral1490g00007 1077 Gene3D Ribonuclease Inhibitor 325 423 IPR032675 -
Pral1490g00007 1077 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Pral1490g00007 1077 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1490g00007 1077 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Pral1490g00007 1077 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Pral1490g00007 1077 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Pral1490g00007 1077 SUPERFAMILY RNI-like 293 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1490g00007 Pral-Chr1490 21853 27156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1490g00007 22 1058 Receptor kinase-like Gene Family AT5G56040 47.243 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral1490g00007 Pkinase 4.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1490g00007 - - gmx:100807225 1702.18