Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1484g00003 ATGACAGCAAGAGTGATAGGAGAGGAGAGAACAGCAGAAATGGAGAGAAGGGGAAGAGAATTTCTCATATGTGTGAGCTTATTGGGCCTAATGGTAACCCTAACAGAGTCTGCGACTGTAACCATACCGGTAGGAGTGATTCTGGATTTGAACTCATCACTTGGCAACACCACTCTCAACTGCACCAACCTCGGACTCCTCGACTTCTATTCCACACATGATTCCTTTGCGACGAGGCTTGAACTCCATTTCAGGCATTCTGGAAACGATCTCCTCACTGCAGCTTCTGCAGCTTGGAAGCTAATAAGTAAAACAAAGGTGCATGCAATCTTGGGACCTCAAAACTCAGAGCAAGCAGGGTATGTTGTAGAACTTGGTAACAAGACTAATGTACCAGTGATTTGGTTTTCTCCATCTGGTCCATCTCTGTTGCCACCTCGTACCCGGTTCTTCATCCACTCCAACTCCACTAGAAGCCATTGCTCTCAGTTCGAAGCTATAGCAGCCATTATCGAAGCTTATAATTGGCAGTCTGTGATCCCCATTTATGAAGATCCAGAATTCGGCAACGACCTCATTCCATGCCTCTCTTATGCCTTGCAAGATATGGACACTCGAATGCCTTACATAAGTGCCATTAATCAAACTTTCACGGATTCTCGAATCACCGATGAGCTTAACAAGATAAAAGCCCAGCGAACATATGTGTTTGTCGTTCATATGTCTCTGGAGCTTTGGTCAAGATTTGGGGAACATGCCAAACATGAGGACATGATGAGCGAAGGATACGCTTGGATACTTTCGCAAGGCCTGTCTTCTGTCATGGATCCCGAAGCTTTAGATGTCAGAATAAAAGGCTATATGGATGGTGCTTTGGGTGTGAGGCCATTCGTTTTATCCAAATTAACTAAGCGCCTTTCCTTAGCGGAAACATTAAGGTCTGAGTACGGTAAAACTCTTTCTCTAAATGGCTTGTGGGCTTATGACACTATCACAGCACTGGCCAGAGCCGTAGAGAAGGCCGGCTTAGTCAGTTTTAATGAAAGTGGAGCTGATCTTCGCAAAAAAACAGGCCGAAAACTTCGCAAAGCAATTCTGGAAACTGATTTCGTTGGCCTGTCAGGGAATTTTAATTTGACGCAAGAACAACTAGAACAATCACATGTTGTGGTATACAATGTGCAAGGCCAAAAAGAAAGGACAATTGGATATTGGAGCCCTGGAAAAGGACTTGTTCGAATGCAAAGCTCACATGGTGAACCAATATGGCCGGGTAACACAAAGGAGATACCACCCAAGTTGAAAGTTGGGGTCCCAAAGACGCATTTTACTGAATTTGTTGATGTTAATGGTAGTGTAGAAGGGCAGAATGTATCAGTTTCTGGCTTTGCTGTTGATGTATTTAAGAAAGTGGTTGGCATCTTGCCATTACATTTACCTTATGACTTTGTGCCTTTGAACAACAGTGATGGAGAGCTGACTCCCTCCAGCTATGATGATCTTCTCTGCGAATTCACAGACAAGAAAGTTGATGTTGATGTTATAATTGGAGACATTACAATTGTCGCGAGTCGCACAAATTGTGTTGATTTCACAATGCCGTATTTAGATTCAAGTGTGTCCATGGTGGTAAAAGTGAGGTCTGACTCCAAAAGCATGTGGATCCTCTTCAAACCTTTTCATTGGTTACTTTGGTTCATTCTTGGTATGATTCTTGTGGCTGCAACTTTTATTGTGATTATATTGGAAAAACGAAAAGAAAAGAAAATGAAGGATGGTATCAGAGGAAGCAAATCCGAAAATAAAACAGAGGATGATGTTGGAGGAAGCAAATCCGAAGACTTTGTCCGCAATCCCTTCCTTATTTACATGAGCGATGTTGGGTTTTTGAAAAGTTGCAAATCTAAATGGATGATAGGACAAAGCCAAAGCCTCCTCCATGGAAGGACGTGCAAGAGATTAGAAGGAGCAATCGGAAAGTGGGATATCAAAGGGATTCCTGGATGA 2007 0.4295 MTARVIGEERTAEMERRGREFLICVSLLGLMVTLTESATVTIPVGVILDLNSSLGNTTLNCTNLGLLDFYSTHDSFATRLELHFRHSGNDLLTAASAAWKLISKTKVHAILGPQNSEQAGYVVELGNKTNVPVIWFSPSGPSLLPPRTRFFIHSNSTRSHCSQFEAIAAIIEAYNWQSVIPIYEDPEFGNDLIPCLSYALQDMDTRMPYISAINQTFTDSRITDELNKIKAQRTYVFVVHMSLELWSRFGEHAKHEDMMSEGYAWILSQGLSSVMDPEALDVRIKGYMDGALGVRPFVLSKLTKRLSLAETLRSEYGKTLSLNGLWAYDTITALARAVEKAGLVSFNESGADLRKKTGRKLRKAILETDFVGLSGNFNLTQEQLEQSHVVVYNVQGQKERTIGYWSPGKGLVRMQSSHGEPIWPGNTKEIPPKLKVGVPKTHFTEFVDVNGSVEGQNVSVSGFAVDVFKKVVGILPLHLPYDFVPLNNSDGELTPSSYDDLLCEFTDKKVDVDVIIGDITIVASRTNCVDFTMPYLDSSVSMVVKVRSDSKSMWILFKPFHWLLWFILGMILVAATFIVIILEKRKEKKMKDGIRGSKSENKTEDDVGGSKSEDFVRNPFLIYMSDVGFLKSCKSKWMIGQSQSLLHGRTCKRLEGAIGKWDIKGIPG 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1484g00003 668 Pfam Receptor family ligand binding region 76 396 IPR001828 -
Pral1484g00003 668 Gene3D - 159 411 - -
Pral1484g00003 668 Gene3D - 432 558 - -
Pral1484g00003 668 SUPERFAMILY Periplasmic binding protein-like I 41 432 IPR028082 -
Pral1484g00003 668 Pfam Ligated ion channel L-glutamate- and glycine-binding site 451 546 IPR019594 GO:0004970|GO:0016020
Pral1484g00003 668 PANTHER OS06G0188250 PROTEIN 24 388 - -
Pral1484g00003 668 Gene3D - 78 386 - -
Pral1484g00003 668 SMART GluR_14 433 640 IPR001320 GO:0015276|GO:0016020
Pral1484g00003 668 SUPERFAMILY Periplasmic binding protein-like II 432 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1484g00003 Pral-Chr1484 43247 47146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1484g00003 21 585 Ion Channels AT2G29110 37.294 2.43e-103 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1484g00003 K05387 - qsa:O6P43_022275 412.535