Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1484g00002 ATGTTAGAGTTACGGAAAAGCTTGAAAGCTTCTTCTCCGTCAAGTCTTGTTGTGCTTTTAGTACTATTATGGCTTAACATCACAGTGAGGCCTTCCATGGCCACACAAACAGTACCAGTAGGAGTCATTCTTGATCTGAACTCAACATTTGGTGACATGGTGAACAACAGCCTCGCCCTCGCCGTCGAAAATTACTACTCCATTCATAACGATACAGCCACCAGGATCTACCTTGATGTCCGGCATGTTTCTCAGAACAACATCGTCATCGCGGCATCAAGAGCTTATGATCTCATGAAAAAAGTAAGAGTACGTGCCCTGTTGGGGCCGCAGAATTCAGAGCAAGCAAGGTACATTGTGAGACTGGGTGAGCTATTGCAAGTACCTGTCATTTGGTTTCCCATAACGGGTCCATCTCTTTTGCCACCGCCATCCCCATCCTCCATCTACATCGATCAAGGCCTTAATTGCTATCAGTTCCAAGCCATAGCCGCCAGTCTTAAGGCTCTTGGGTGGCAATCAATCATCCCCATTTATGAAGAGACTGAATATGGCAGTCATCTTGTTCCATGCCTCACCAATGTCTTGAAAGAGATGGGCATACGAATGGCTAACGTAACTGCCATTGCTTCAGATTCATCAGATCTTGAAGTTAACATTACTCTTAACAGGTTAAACAACATGCGAACACATGTATTTCTTGTCCATATGAGCATGGATCTCGGAACAACATTTATTAGCTCTGCACAAAAGAAAGACATGATGGGCGAAGGATATGCTTGGATACTTACCCAAGAGCTATCTTCTTTGACAGATCCTCGAGTTATGGTTCCGAGAAAATTGTATCGTGGCCAAGTCCCATCTGGGACTTTTATTGATTCTTTTGCTTTGAAAGGGTATATGCAAGGTGCATTGGGAGTGAGGCCAATGGATTCGATCAAAACAGATGCGCGTAACGTGATAGAGGATAATTTCACTAATAAGTTCCCAGGAGCTAGGCTAACTATCTATGGATGGTGGGCTTATCACACAATCGAAGCACTGGCTATGGCATTAGAGAAGCCCGGCGCAGACAATAATGGCACAAAACTTCGAAGTGAAATTCTGGATACTAATTTCACAGGCGTGTCAGGGATAATTTTTGATTTAAAACGAGGACAACTAGATCAATCAGTGCTTGAAGTATACAATGTGGTAGGAACAAGAGAAAGGATCATCGGATCTTGGAACCCCAAAGATGGATTTGTTCAAAATAATAGTAAAAGTGGCGAGGTATCTGGTGATGAATACCAACAAAGTGGTCCACTGGCACTGTGGCCGGGTGACACATTGGATAAACCACCGAAGTTGAGAATAGGAGTCCCAAGAACAAATTCTTTTCCTGAATTTGTGAATGCAGGTAATTCTAGTAAGCTTCGGATTGATGGCTTTGCTATTCATGTGTTCTTAAAAGCTATCAGTCGTTTGCCGTTTCTGTTAAATAATTATGAGTTTGTTCCCTTGCCGAAAAAAAGCGATACTCCCACAAACTATGATGATATTCTCTGCAGCCAAATGAAAGACGAGGATCTTGATGCTATAATTGGAGACATCACAATTGTAGCAAAACGCACAAACTGTGTTGATTTCATGTTGCCGTATCTAGATTCAAGCGTAGCAATGGTGGTAAGGGCGAAGGCCTACAGAAATGCGATGGAGTTTAAAAGCAAAGCTGCAGGATGGATGGTGATACTGACGTCACTCCTATTCATCTTAGTAGTGCAAGTTTACACGGCGAATTTGACTTCAATTTTAACACAAGGAGAGAAGAAAGAGCCTGCATTTAAGGACGAAAATGGGGTTAAAAGTAGCAATGTGTTTGTGGGACATCGAAATGGGTCGTGGGTGAAGGAGCTTCTGATTAACCAAATGGGATTCGACCCGTCTCGATTAAAGGCTCTAGCAACTGGTGAGGAGTACAATTCAGCATTGTCAAATGGAACAGTGGAAGCTATTTTTGATGAAACTCCCTATCTCACGCTCTTTCTCTCCAGATATAGATCTGGCTTCATGATGACAGGACCAATCCATAAAACTGGTGGATTTGCCTTTGCATTCCCAAAGAAATCTAGCCTGGCCTTGCATTTCTCGAATGCAATCTTAAAGGTGACTCAAGATGCGGAGCCATATCGTGTGCTGATGGCCAGGAGCTCCTTACCCACCTCCATTGAAGATTTCATTTTTGAAGACCATAGTGATCCTGAGACGACAAGTTTGAAAATAGATGACTTTGGAGGCCTTTACCCTGTCCTAATAATATCTGTAGTAGCTCTCTTCATATCTGTAGTAGTAGCACCTCTGAATCCATCAGTAATTCGATGCTTGCTTAGCAAGCGGTTTCCATTCCGAATCCATCATCAGTGA 2403 0.429 MLELRKSLKASSPSSLVVLLVLLWLNITVRPSMATQTVPVGVILDLNSTFGDMVNNSLALAVENYYSIHNDTATRIYLDVRHVSQNNIVIAASRAYDLMKKVRVRALLGPQNSEQARYIVRLGELLQVPVIWFPITGPSLLPPPSPSSIYIDQGLNCYQFQAIAASLKALGWQSIIPIYEETEYGSHLVPCLTNVLKEMGIRMANVTAIASDSSDLEVNITLNRLNNMRTHVFLVHMSMDLGTTFISSAQKKDMMGEGYAWILTQELSSLTDPRVMVPRKLYRGQVPSGTFIDSFALKGYMQGALGVRPMDSIKTDARNVIEDNFTNKFPGARLTIYGWWAYHTIEALAMALEKPGADNNGTKLRSEILDTNFTGVSGIIFDLKRGQLDQSVLEVYNVVGTRERIIGSWNPKDGFVQNNSKSGEVSGDEYQQSGPLALWPGDTLDKPPKLRIGVPRTNSFPEFVNAGNSSKLRIDGFAIHVFLKAISRLPFLLNNYEFVPLPKKSDTPTNYDDILCSQMKDEDLDAIIGDITIVAKRTNCVDFMLPYLDSSVAMVVRAKAYRNAMEFKSKAAGWMVILTSLLFILVVQVYTANLTSILTQGEKKEPAFKDENGVKSSNVFVGHRNGSWVKELLINQMGFDPSRLKALATGEEYNSALSNGTVEAIFDETPYLTLFLSRYRSGFMMTGPIHKTGGFAFAFPKKSSLALHFSNAILKVTQDAEPYRVLMARSSLPTSIEDFIFEDHSDPETTSLKIDDFGGLYPVLIISVVALFISVVVAPLNPSVIRCLLSKRFPFRIHHQ 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1484g00002 800 SMART GluR_14 451 723 IPR001320 GO:0015276|GO:0016020
Pral1484g00002 800 SUPERFAMILY Periplasmic binding protein-like II 445 720 - -
Pral1484g00002 800 Gene3D - 593 693 - -
Pral1484g00002 800 CDD GluR_Plant 449 721 - -
Pral1484g00002 800 Gene3D - 158 344 - -
Pral1484g00002 800 SUPERFAMILY Periplasmic binding protein-like I 34 417 IPR028082 -
Pral1484g00002 800 Gene3D - 33 154 - -
Pral1484g00002 800 Gene3D - 446 578 - -
Pral1484g00002 800 Pfam Bacterial extracellular solute-binding proteins, family 3 515 721 IPR001638 -
Pral1484g00002 800 Gene3D - 588 719 - -
Pral1484g00002 800 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 586 IPR015683 -
Pral1484g00002 800 Pfam Receptor family ligand binding region 55 400 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1484g00002 Pral-Chr1484 28341 32757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1484g00002 35 721 Ion Channels AT2G29120 31.218 1.89e-100 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1484g00002 K05387 - qsu:112025251 425.631