Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1479g00002 ATGCCTCTTCTTAAAAGGAAGCCTTTTGTCTTGGCTGAGCCACCTAAGGATTTGGAGCCACATGAGCTTGTCCATCAAGTTCGATTCACAAAAGAAATTTTCCGAGATTATCATGATTATTTGAACCGTATAAATTTGTATCGCCAGAGAGTTTGGACATGTAAAGTCACTGGGAAATCTAACTTGACTTTTGAAGAGGCTATGGTGTCAGAAAAGCGTGCCACTGAAAAAGTCCAACAAATTCCCAAAGAATTAATGGAACCTGCACTAAGGATTATTCAATACAGCATGCTTCCTTTGAGGGAACTCGCTGACGCAATAGCTGAAAAATTGCAAGAACAGGTGTATGTGGGTGCTGAGCTGCATGGAAAAAGGGATGATGGAGAGCATCCCTGCAAAATATTAAAAGTCGTTAGGGAAGGAGTTGATGAATTCCGCTATGAGGTAGCTTGGCTTGACAAAAACAAGAGAACAATTGAAAAAGCAGAAGTCAGTGCCAAGGATTTGGTGCAGAAGAAGTTTCCTTTTAGCAGGAACATCTTGAAATCTTTTATCCGGGAATCTACATATCGTAATGCTCCTTGGGTGATACATGATGAATTGGCACGAAGTTATGGAATCTCAACTGATATCCCAGAGGAATTAAAAGGAAGAGCTTTCTTCAACAATGGACTTTTAATTTGCAACAAGAAAAGGAAAAATGAGGATGTAAATGGAGATGCTGAAAATTGTAAAAGAAGGAAGTCGGGTGATGCAAAAAATGATGGCTTCCCTTCCGTGAAAGAAAATGGCCAATGCAAGGAGGAACCTATCAAATATCCGATTGATGATTTATTGGTGAAACCTAGTCCAAGAGATCCTCATCGTCCTTCTCCATCGAGAGATTTCAATGTTCCGATTCATCATGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTACTTCTTTTGGTAGGTTGTTGCATTTGTCGCCCTACTCTCTGGAAGATTTTGAAAATTCAATCTGCCACAAGGAAAGCAATGTGGTTCTCCTAATGGAATCTCATGCAGCACTCTTTCGGGTGCTCATGAAAGACGATGGTGATTATGCTTCAGTTGTGCAGAAAAGAAAACGGAAGTTTAAGATTACAATGATTAATTGGCAAGAATATTTATGCGATTTTCTAGAAATGATCAATGTTCCTGGGTTACGGCAGTTTGAAGCTACCATAAAAAGGGGACATTATGGCCTCGTTGATATCAATGCTAAGCTAGAAATCTTGTGCGAATTGGTCAATCGAGTTCTTGAAACCTCCATTTTTAGGGAAAAGTTGGACGAGGTTATTGAACAGCGGCAGGCAATTGGTGCTACTAGAAGAGGAGAAGCGCTAAAAGATGGTAGAAAAAGAAGAGAAGAAAAGGAACGGCTGAAAGCTGAGTTTGAAAGCAATGGGAGTATGGATGGGCACCATCAAATAAATGTAGCAACTGTCTCAACAAAAAATAATCACAGTAGACAGAATGGGGACATGGGAAAGAAAAGAAATGGAGAGAAGGAATCATCTAGGAACGGGGATGCTTTGGGTGGAAGTTTGGACAAACATTCAAATGGTGCGTCCAAGAAGTCTTCTAGGAAGCTGAGTTTAGAACTGAAAGAACCAGCAGGAAATGGAAATGAGTCATCCAGAAAGGAATCACAGAAGCAATTAAATGGGGAGAACGATCCGCCAGAGAAGAACAGTATAGAAAAGAGGAGAGAATATTTTGAACGAGAGATGGAAAAACGATTTGTTCGTACAAGTCCCCTGGGTAAAGACAGGCATTACAACAGGTATTGGTGGTTTCGCCGTGATGGGAGGATATTTGTGGAAAGTTCTGATTCCAAGGAATGGGGCTACTACAGCAGCAAGGAAGAGCTTGAGGCATTGATGAGGTCACTGAATCGCAAGGGTGTGCGGGAAAGAGCATTGCACAAGCAACTGGAAAAATATTATAGTAGAATATGTACGGAACTTCAGAAGAGGTTAAAGGATCAGATACAGAAAATTGCACTAGATGAGTCTGTGCTCCGAAGGTCTACTCGTGTTCGAGCGCCACCTAGAGAAAATCCTGCCAATGCTTTCCTCAAATATGTTAATAAGTGGAAGGAAGAGTAG 2133 0.4098 MPLLKRKPFVLAEPPKDLEPHELVHQVRFTKEIFRDYHDYLNRINLYRQRVWTCKVTGKSNLTFEEAMVSEKRATEKVQQIPKELMEPALRIIQYSMLPLRELADAIAEKLQEQVYVGAELHGKRDDGEHPCKILKVVREGVDEFRYEVAWLDKNKRTIEKAEVSAKDLVQKKFPFSRNILKSFIRESTYRNAPWVIHDELARSYGISTDIPEELKGRAFFNNGLLICNKKRKNEDVNGDAENCKRRKSGDAKNDGFPSVKENGQCKEEPIKYPIDDLLVKPSPRDPHRPSPSRDFNVPIHHVGDLLMVWDFCTSFGRLLHLSPYSLEDFENSICHKESNVVLLMESHAALFRVLMKDDGDYASVVQKRKRKFKITMINWQEYLCDFLEMINVPGLRQFEATIKRGHYGLVDINAKLEILCELVNRVLETSIFREKLDEVIEQRQAIGATRRGEALKDGRKRREEKERLKAEFESNGSMDGHHQINVATVSTKNNHSRQNGDMGKKRNGEKESSRNGDALGGSLDKHSNGASKKSSRKLSLELKEPAGNGNESSRKESQKQLNGENDPPEKNSIEKRREYFEREMEKRFVRTSPLGKDRHYNRYWWFRRDGRIFVESSDSKEWGYYSSKEELEALMRSLNRKGVRERALHKQLEKYYSRICTELQKRLKDQIQKIALDESVLRRSTRVRAPPRENPANAFLKYVNKWKEE 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1479g00002 710 Pfam DDT domain 301 358 IPR018501 -
Pral1479g00002 710 MobiDBLite consensus disorder prediction 451 477 - -
Pral1479g00002 710 ProSiteProfiles WAC domain profile. 22 129 IPR013136 -
Pral1479g00002 710 MobiDBLite consensus disorder prediction 479 498 - -
Pral1479g00002 710 Coils Coil 152 172 - -
Pral1479g00002 710 MobiDBLite consensus disorder prediction 451 575 - -
Pral1479g00002 710 MobiDBLite consensus disorder prediction 236 264 - -
Pral1479g00002 710 SMART testlast3 300 361 IPR018501 -
Pral1479g00002 710 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Pral1479g00002 710 MobiDBLite consensus disorder prediction 236 255 - -
Pral1479g00002 710 Coils Coil 456 476 - -
Pral1479g00002 710 MobiDBLite consensus disorder prediction 558 575 - -
Pral1479g00002 710 MobiDBLite consensus disorder prediction 499 514 - -
Pral1479g00002 710 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 590 656 IPR028941 -
Pral1479g00002 710 ProSiteProfiles DDT domain profile. 300 361 IPR018501 -
Pral1479g00002 710 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1479g00002 Pral-Chr1479 4015 10910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1479g00002 398 655 Homeobox Transcription Factor Family AT5G44180 27.306 3.98e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pral1479g00002 WAC_Acf1_DNA_bd 9.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1479g00002 - - qsa:O6P43_023448 979.163