Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1478g00001 ATGCCTGTCATGGATGGAAAGGTGGATAAGAGGCATGACAGTGATTTTGACTCAAATATGCTTGAACAGTTCAGAGGAAATGCAAGGAAAAATATAAAAGGACATAGGAAATCTTACAGTAGATCTTCAAGGAAAATCTTTGATAACAGTTACCAAAAGCACCATGAGAAGGTGGCTTCTAATCTAGCTCTTGATGAAGTTGCTGTCCGAGCGATTGTTTCCATTCTAAATGGACATATAAAACGTTTTATAAAAGACGAGGACTTCCGGACTACATTGCGTCACACTTGTTTCTATTCGTTGAATTTCATTGAGCCAGAAGACGAGAACAGTTCTGAGGCCGAAGCAGTAAGAAGTCTTGAACAAGGAATTGAGACAGTTGAACGAGTCGTTGACGAATCTTTACCTTCAAAAGAATTGAAAAGGGCTTCTTTGCAGCTAGGTTTTGTTACAGGTTTGAGTTTAAATGATTTGAAACATGGATTTACATGTGGGGTTCCGAATTATAAGTTGTCATCTTCTGCTCATCTTTACCTTAGTGCATTATATAAGATTCAGAGAAAAGATAAGGCGTCAGCAAGGCATCTTTTGCAAGTGTTTTGCGATTCACCTTTCCAGACACGGACAACATTGCTGCCCGAACTGTGGGAGGATCTGTTTTCTCCACATTTTTTTCAGCTGAAAGCATGGTACGCTAAGGAAGTTGTCATTCTAGCCAACAAATCAAGCAGAGCAAGAAAACGAAATCTTCTTGAAAAAGTCTATAAGGAGCATTTGGATTCTGGAACTTACATGTTTGCTGTATACTACAAAAATTGGCTCACTGAAGGAGCTGAACCTCCAATAGTTCCTTCTATCGATATTCCATCAATCTCTGTCTTGGAAAGCCGGCAGAAAAGTTCACTAGGTCATTCGTCAGAGCTTTCTATTCCTATTGATTCATCCTCACCTCAACCAACAGTCAGCAAAAGACTTTATCATTCTGTCTTTGGTAGGTTGAGTAAACCGGGAATTGATGACCATGAAGATAGTGAGGGGGATAATGACATTGGCACTTGCATCAGAGGTTGTTACGGTTCAGCTGCCATCGAGCAAACATCTACACATATACCAGAAATAGTGAAATTTACTGATCAAGATGTTAAAGAAGACTCCTTCGAGAATGTGCCACTTGTTTCATTGCATCCTCCAATCAAGACAGGCTCTTCTCTTGAAGGATTGTCTTTTCCAACCGTTCCACAAGAATTTCTTTGTCCCCTTACTGGAAAATTATTGGAGGAACCAGTCACTATAGAGACTGGGCAAACCTTTGAACACGCAGCCCTCAAGTCATGGTTCAGAGAGGGACACAGAATATGTCCTGTAACAGGAGTTACTTTAGATTTTGTGGCCATGCCCCTAACTAACATTGTCTTGAAGAGACTGATTCATAATTGGAAATCAGAACAATTAAGCGAGCTCTTGGATTCCGCTTCTCCAATCTCAAAAAATTCAAGAGAGTCAAAGCTGAAAGATAGGGATGAGATTATTACTTCCAAATTAGAGAGTCTTTTCACTGTGTTAAATGAAGAGGACAAAGTCACTTATGCCAAGCATCTCATTTCCTTTGGGGTTTTAGAATTTCTGCTTCGGAGGTTTGAATTGGGAAATTTGGAAGAGAAAACACATGTGGCGGCACTCTTGCTAAATCTCATTGGAGGAGACTCTTGTTGCATGTATCAGATAGCGAGAGATATTAATAAAAGGTTTCTTCTTGATCTTCTTCACCACAAGGAGTTTACTTCAAGAACTAGCGCAATATTATTGCTTACCAAACTCGTAGCATTAAAAAGAAGAAAGGATGTCACTTCATTCTTAAATAGACTGAAGGGTGAGGATATATCCACTACAATGCATGTTCTGCTCATGTACCTTAAGGATTCTCCGCTGCATCTCAAACCTGAAACTGCTGTTCTTTTGTTGCACTTTGATCTGCTGGTCGAGTCTCAAAATTATGGCTCATACAGAGAGCAGGCTGTGACTTCCATTTCAGAGGCTCTCCATGCCAGCTTAAATGAAGAGAAAGTCCAAGAAAATTGTTGTAGAGCACTTTTTATCTTGGCTGGGCATTTTTCTTCCACTGGGAAGGTACTGACCAAGAGTTGCATTCTAAAAGAAGCGGGATATGTAATCAATGGTTCAGAAGTTGACACTTCTGATCACGAGGAAGAGGATTTATCATGGGATGGAGCCATTTCTTTTGAAAAGGAAGAAGAACGGAGCAAAGAATGGTTGGTGAACTTGTTAGAATCAATGATCGGTGATGGAGAGAGTCCATTTTTGAATTCTATCTCTAAATGTTTAGACTCTAGACATCCAGATTTGGTCAACATGTGTTTGGTAACTGTCTCTTGGTTGAGCTCCTCGCTTTCTACGCAATATGACTCTGGATTACAACTCTCTGCCTTCTTAGCCGTCATTTCTGAGATAGTAGAAGTCCTGGAAAATGGGGAACTTGAACTGAGGATTCTTGCTTCATTGTGCTTGCTTAACTTCAGCAAAATACCAGAATGCAGAACACTTTTGACGACTATGGCAGAAGATATTAATGGTCCTCTTCTTAAACTACTTGATGTGACGTGGACTGCAAAGCAGCTGCACGCGATTATTTCTGGCGTGGATTTGTAA 2667 0.4019 MPVMDGKVDKRHDSDFDSNMLEQFRGNARKNIKGHRKSYSRSSRKIFDNSYQKHHEKVASNLALDEVAVRAIVSILNGHIKRFIKDEDFRTTLRHTCFYSLNFIEPEDENSSEAEAVRSLEQGIETVERVVDESLPSKELKRASLQLGFVTGLSLNDLKHGFTCGVPNYKLSSSAHLYLSALYKIQRKDKASARHLLQVFCDSPFQTRTTLLPELWEDLFSPHFFQLKAWYAKEVVILANKSSRARKRNLLEKVYKEHLDSGTYMFAVYYKNWLTEGAEPPIVPSIDIPSISVLESRQKSSLGHSSELSIPIDSSSPQPTVSKRLYHSVFGRLSKPGIDDHEDSEGDNDIGTCIRGCYGSAAIEQTSTHIPEIVKFTDQDVKEDSFENVPLVSLHPPIKTGSSLEGLSFPTVPQEFLCPLTGKLLEEPVTIETGQTFEHAALKSWFREGHRICPVTGVTLDFVAMPLTNIVLKRLIHNWKSEQLSELLDSASPISKNSRESKLKDRDEIITSKLESLFTVLNEEDKVTYAKHLISFGVLEFLLRRFELGNLEEKTHVAALLLNLIGGDSCCMYQIARDINKRFLLDLLHHKEFTSRTSAILLLTKLVALKRRKDVTSFLNRLKGEDISTTMHVLLMYLKDSPLHLKPETAVLLLHFDLLVESQNYGSYREQAVTSISEALHASLNEEKVQENCCRALFILAGHFSSTGKVLTKSCILKEAGYVINGSEVDTSDHEEEDLSWDGAISFEKEEERSKEWLVNLLESMIGDGESPFLNSISKCLDSRHPDLVNMCLVTVSWLSSSLSTQYDSGLQLSAFLAVISEIVEVLENGELELRILASLCLLNFSKIPECRTLLTTMAEDINGPLLKLLDVTWTAKQLHAIISGVDL 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1478g00001 888 SUPERFAMILY ARM repeat 528 873 IPR016024 -
Pral1478g00001 888 SUPERFAMILY RING/U-box 406 482 - -
Pral1478g00001 888 ProSiteProfiles U-box domain profile. 411 486 IPR003613 GO:0004842|GO:0016567
Pral1478g00001 888 CDD RING-Ubox_PUB 413 460 IPR045210 -
Pral1478g00001 888 PANTHER OS04G0584500 PROTEIN 405 885 - -
Pral1478g00001 888 SMART Ubox_2 415 479 IPR003613 GO:0004842|GO:0016567
Pral1478g00001 888 Gene3D - 505 880 IPR011989 -
Pral1478g00001 888 Pfam U-box domain 412 483 IPR003613 GO:0004842|GO:0016567
Pral1478g00001 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 485 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1478g00001 Pral-Chr1478 15895 20477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1478g00001 412 479 U-box Gene Family AT5G42340 44.118 2.69e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1478g00001 - - ccaj:109801846 948.347