Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1476g00001 ATGGCCTACGCACTTAGGCAAAGAAAGCAAAACACTAATTATGCAGATTCGGACAGTCCTGGAAGTGATTCAGTTGGTTCCGATACAGACTATTTATCAGGGAGCTTTAGTAGACAAAAACGGAGAAGGAACTTGACATTATGCTCTCCAGCTACTAAGGAGACTAAAACGGCAAACTCAGGTGTAAATTTGACAGCAAGGCGTCGACGAGGTCGAACCTCAAAGAAGAGGGCACAGGAAATAAAAAACAAGGAAGCCAGTAATGCTACAAGTTCAAACAATAAAAACGGAACATTATCTGCTGAACAACCAAGTTCAAACAAACTAACCATTTTATCATGGTTGTTAGATTGCAATGTTATCAAGAAGGGTGAACATGTCACCTACTCGAATAAAATAAAGGGAAGTACGGCAAAGAGAGGAACAATTGCCGGAGGTGAAATTCTCTGCAGCTGTTGCCAGAGGGAATATTCTGTGTGGGCCTTTGAGAAACATTGTGGAAGTGACCTTAAACAACCTTATGAACATATATACCTTCCTGAAAAACAAAGATATCTTCTGGAGTGCATGGTGATCGCTTTGTGTGAGAACAGTGAACCGAAACATCAGGAAACACATTCCTTTGTATCCAAGAGAAATGCAGGAGATAAACATGATTATGCTTGTCCTGTTTGCGGAGATGGGGGAGAGTTGATCTGCTGTGACAAGTGCCCCTCCACATATCATTTAAACTGTTTGAATTTGGAGAGGCTTCCTGAAGGAAAATGGTTCTGTCCTTATTGTGTATGCAAGCATTGTGGGCTTAGTGATAAAAGCAAGCAACTGATTAAGTGCTTCCAATGTAACAAAAAATTTGACTGGGGATGCTTTAAGGAATTTGAGAAAGAAGCTCTTAAAGATGCCTTAGACATTGACTGTTCGAGATTATACTGTCAGCAAAGTTGTAGAAAGACCCATGAGAAATTGGAGAGTTTAGTTGGAGTCAGGAATGAAGTCGATGAAAGCTACTCTTGGAGAGTTATTCGTCAAATGGAGAAAAGAACATCAACTGTCTCTGAACACCAATATGTTGAAAATAATGCCAAGGTTGCAGTTACATGGAAATTAATGGATGAAGCTTTTGAGACAATAGTTGACAGATATACAGGCCTCAATGTGGTTCGAAGTGTACTATGCAGTCTTCGGTCAAAGTTACCCAGGGTTGATTATAGCCGTTTCTATACGTTTATACTGGAAAAGGATGATGAAATTGTCTCTGCTGCTTCTGTGAGAATCCATGGGCGGAGGCTTGCAGATATGCCCTTTATGGCCACACATAAAAATTATCAAAGAAAAGGATACGGTAGATATCTTCTGGCAGTGGTGGAATCGTGTTTAATGCTGTGGAAAGACTTAACATTGTCGCCCGCAAAATCAGTTAGCAATGACCAAAAAGAAGAGAGGCAAATTGGCATTCTGAATGTCGAGGAACCTCGAAATAATCCAATGGACCGTTCCCTTCTAGACCTTAACATACCCCTCCTGAAGAATGCACAAGGACTGTGGAAGATGATGCGTAGTTCGCGGCTAACGTTGCTGATTGAGTAG 1587 0.4102 MAYALRQRKQNTNYADSDSPGSDSVGSDTDYLSGSFSRQKRRRNLTLCSPATKETKTANSGVNLTARRRRGRTSKKRAQEIKNKEASNATSSNNKNGTLSAEQPSSNKLTILSWLLDCNVIKKGEHVTYSNKIKGSTAKRGTIAGGEILCSCCQREYSVWAFEKHCGSDLKQPYEHIYLPEKQRYLLECMVIALCENSEPKHQETHSFVSKRNAGDKHDYACPVCGDGGELICCDKCPSTYHLNCLNLERLPEGKWFCPYCVCKHCGLSDKSKQLIKCFQCNKKFDWGCFKEFEKEALKDALDIDCSRLYCQQSCRKTHEKLESLVGVRNEVDESYSWRVIRQMEKRTSTVSEHQYVENNAKVAVTWKLMDEAFETIVDRYTGLNVVRSVLCSLRSKLPRVDYSRFYTFILEKDDEIVSAASVRIHGRRLADMPFMATHKNYQRKGYGRYLLAVVESCLMLWKDLTLSPAKSVSNDQKEERQIGILNVEEPRNNPMDRSLLDLNIPLLKNAQGLWKMMRSSRLTLLIE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1476g00001 528 SMART PHD_3 221 262 IPR001965 -
Pral1476g00001 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 301 IPR013083 -
Pral1476g00001 528 MobiDBLite consensus disorder prediction 1 103 - -
Pral1476g00001 528 ProSiteProfiles Zinc finger PHD-type profile. 219 264 IPR019787 -
Pral1476g00001 528 PANTHER PHD FINGER PROTEIN 12 54 461 IPR042163 GO:0003714|GO:0045892
Pral1476g00001 528 CDD NAT_SF 409 456 - -
Pral1476g00001 528 Pfam PHD-finger 222 263 IPR019787 -
Pral1476g00001 528 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 402 458 IPR016181 -
Pral1476g00001 528 SUPERFAMILY FYVE/PHD zinc finger 216 267 IPR011011 -
Pral1476g00001 528 CDD PHD2_CHD_II 222 261 - -
Pral1476g00001 528 Gene3D - 386 460 - -
Pral1476g00001 528 Pfam Tify domain binding domain 141 191 IPR032308 -
Pral1476g00001 528 MobiDBLite consensus disorder prediction 84 103 - -
Pral1476g00001 528 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1476g00001 Pral-Chr1476 14510 17727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1476g00001 90 459 PHD Transcription Factor Family AT1G05380 37.731 1.99e-77 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral1476g00001 TDBD 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1476g00001 - - pcin:129311154 716.842