Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1460g00012 ATGACAAGAAGTGTGTCCAATTGTGGCTCATCCGCTCCGTGCGGTAATGAAGCAGAGACAGTAGAAATAAAGAAAGGTGCATGGACAGAGGAAGAGGACTCTATTCTGAGCAACTACATCACCCTTTATGGCGAAGGCCGATGGAGCTCTGTTGCTCGCTGTGCAGGTCTTAAGCGAACGGGCAAAAGCTGCAGACTAAGATGGTTAAACTACTTGAGTCCAAAGGTTCGACGCGGCAATATCACACTCCAAGAACAGTTCTTGATTATCGACCTCCATTTCCGCTGGGGCAATCGGTGGTCGAAAATCGCGCAGCACTTGCCAGGCAGAACAGACAATGAGATAAAAAACTATTGGAGGACGAGAGTGGTGAGACAGGCTAAACGATTGAAATGCGACGAGAATAGCAAACAATTTAGAGACGCCTTGCGTTTCGTATGGATGCCTCGCCTCCTGGAGAGGATCCGGGCCTCCTCATCCTCATCCGGACCTGGCCCTGTGAATGCCCAAGCTCATAGCGACCACTGTCTCACGGCGCTGCCATCGGCGCACTCCGAACTACTTCATGCGCAAGTTCCTCCTCTCTCCGGGTCCAACCTGTTTTGCAGTTTTACGGAAGAAGGACAAGTGGAATCGTCGGAGATGCAAGCGCTTGAGGCGACCGGTGGTTTTGGAGTTGCCGAGTCTTGGACGGATGAAAACACCTGGTTCTTGCAACAGCAGCTGTCCGGTGAGATATTGATTAATCCGACCCATGGTTGA 762 0.5131 MTRSVSNCGSSAPCGNEAETVEIKKGAWTEEEDSILSNYITLYGEGRWSSVARCAGLKRTGKSCRLRWLNYLSPKVRRGNITLQEQFLIIDLHFRWGNRWSKIAQHLPGRTDNEIKNYWRTRVVRQAKRLKCDENSKQFRDALRFVWMPRLLERIRASSSSSGPGPVNAQAHSDHCLTALPSAHSELLHAQVPPLSGSNLFCSFTEEGQVESSEMQALEATGGFGVAESWTDENTWFLQQQLSGEILINPTHG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1460g00012 253 FunFam MYB transcription factor 82 145 - -
Pral1460g00012 253 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Pral1460g00012 253 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Pral1460g00012 253 Gene3D - 22 78 - -
Pral1460g00012 253 CDD SANT 27 72 IPR001005 -
Pral1460g00012 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Pral1460g00012 253 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 198 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pral1460g00012 253 FunFam Myb transcription factor 25 77 - -
Pral1460g00012 253 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Pral1460g00012 253 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Pral1460g00012 253 CDD SANT 82 121 IPR001005 -
Pral1460g00012 253 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Pral1460g00012 253 SMART sant 24 74 IPR001005 -
Pral1460g00012 253 SMART sant 77 125 IPR001005 -
Pral1460g00012 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Pral1460g00012 253 Gene3D - 81 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1460g00012 Pral-Chr1460 29601 30620 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1460g00012 19 242 MYB Transcription Factor Family AT2G47190 47.410 2.86e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1460g00012 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1460g00012 K09422 - gmx:547458 284.648