Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1444g00003 ATGGCTTCGAAGCTATGTACCCTCTCAACAATGGCGTTTCTTCTCCTCCTTCCCTTGTTCACCTCCTTAGCATTTGCAGACACTTCTCCTTCAACTCCTGTCACCCCAGCAACTGCATGTAGTTCCACCCCCGACCCTTCTTACTGCAAGTCCATCCTCCCCTCCCACCAGAAAGGCAATGTCTACGACTATGGCCGTTTCTCCGTCAGCAAATCCTTATCGCAGTCTCGTAAATTCTTGAGCCTAGTCGATAAGTATCTCAGACGACGATCCACTTTATCCGCCGCCGCCATTCGTGCACTCGAAGATTGCCGGACGCTGGGCGAGCTCAACTACGACTTCCTTTCAAATTCCTTTCAAACTGTGAACAAGACGACTAGGTTTCTTCCGAGTTTGCAGGCTGATGATATCCAAACCCTTCTCAGCGCTATCTTAACTAACCAACAGACCTGCCTCGATGGCCTCAAAGACACAGCTTCGGCTTGGAGCGTCAAGAACGGACTCTCCGTCCCACTTTCTAACGATACCAAGCTGTACAGTGTGTCCCTGGCTCTGTTCACAAGAGGCTGGGTTCCCGAAGCCAAGAACAAAACGACTGCATTTCAGCCAACCAAGAAGCAACTTGCCTTCGGAAATGGGCGTTTGCCGCTTAAAATGTCAAGCAGGACTCTTGCCATCTACCACTCCGTGAGTCACAGAAAACTGCTTCAGACAGCCACCGTGGGCGGTGACGTGGTTGTTGTGAAGGACATCGTCACGGTGAGACAAGACGGAACTGGAAACTTCACCACCATCAATGACGCCATTGCCGCCGCTCCAAACAAGTCCTCCTCTGCCAGCGGCTACTTTCTCATCTACGTCAGCGCAGGTGTTTACGAAGAATATGTGAGTATCGATAAAAAGAAGACATACTTGATGATGGTGGGAGACGGTATCAACAAGACAATTATTACCGGCAACCGAAGTGTCGTTGATGGGTGGACCACCTTCAACTCCGCAACTTTTGCTGTGGTAGGACAAGGATTCGTCGGGGTGAATATGACGATTCGTAACACGGCGGGGCCGGAAAAACACCAGGCCGTTGCAGTTCGAAATGGAGCAGATTTATCGACGTTTTACAGTTGCAGCTTTGAGGGTTACCAGGACACGTTATATGCGCATTCTCTGAGACAGTTCTACAGAGAATGCGATGTGTACGGCACGGTAGATTTCATATTCGGGAACGCCGCCGTGGTACTCCAGAAGTGCAATCTGCATCCTCGTTTACCCATGAGCGGGCAATTCAACGCCATCACGGCACAGGGGCGAACCGACCCGAATCAAAACACGGGCATTTCGATCCATGACTGCAGCATCAGAGCAACCGACGATTTGGCTGCGGCCAATGGTTCGGTGAGCACGTACCTCGGGAGGCCATGGAAGGAGTATTCGAGGACGGTTTATATGGAGAGCTTTATGGATGGTGTGGTAGCGAGCGCGGGTTGGCAGAAATGGGACGGAAATTTCGCTTTAAGCACTCTGTATTATGCGGAGTTCAAGAACAGCGGGCCTGGGTCGAGCACCACCGACAGAGTGACGTGGCCGGGCTACCATGTTATTAACGCCACCGACGCTGCTAATTTCACGGTGTCCAACTTCTTGCTCGGAGATGACTGGCTGCCTCACACGGGTGTCACTTACACCAGCACCTTGATATAG 1698 0.5153 MASKLCTLSTMAFLLLLPLFTSLAFADTSPSTPVTPATACSSTPDPSYCKSILPSHQKGNVYDYGRFSVSKSLSQSRKFLSLVDKYLRRRSTLSAAAIRALEDCRTLGELNYDFLSNSFQTVNKTTRFLPSLQADDIQTLLSAILTNQQTCLDGLKDTASAWSVKNGLSVPLSNDTKLYSVSLALFTRGWVPEAKNKTTAFQPTKKQLAFGNGRLPLKMSSRTLAIYHSVSHRKLLQTATVGGDVVVVKDIVTVRQDGTGNFTTINDAIAAAPNKSSSASGYFLIYVSAGVYEEYVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFNSATFAVVGQGFVGVNMTIRNTAGPEKHQAVAVRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDVYGTVDFIFGNAAVVLQKCNLHPRLPMSGQFNAITAQGRTDPNQNTGISIHDCSIRATDDLAAANGSVSTYLGRPWKEYSRTVYMESFMDGVVASAGWQKWDGNFALSTLYYAEFKNSGPGSSTTDRVTWPGYHVINATDAANFTVSNFLLGDDWLPHTGVTYTSTLI 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1444g00003 565 SMART PMEI_2 31 185 IPR006501 GO:0004857
Pral1444g00003 565 Pfam Pectinesterase 252 550 IPR000070 GO:0030599|GO:0042545
Pral1444g00003 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 188 IPR035513 -
Pral1444g00003 565 CDD PMEI-like_3 38 190 - -
Pral1444g00003 565 Gene3D - 246 564 IPR012334 -
Pral1444g00003 565 NCBIfam pectinesterase inhibitor domain 8 186 IPR006501 GO:0004857
Pral1444g00003 565 PANTHER PECTINESTERASE 21 554 - -
Pral1444g00003 565 Pfam Plant invertase/pectin methylesterase inhibitor 37 185 IPR006501 GO:0004857
Pral1444g00003 565 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Pral1444g00003 565 FunFam Pectinesterase 245 564 - -
Pral1444g00003 565 SUPERFAMILY Pectin lyase-like 248 563 IPR011050 -
Pral1444g00003 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 188 IPR035513 -
Pral1444g00003 565 FunFam Pectinesterase 37 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1444g00003 Pral-Chr1444 10864 12887 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1444g00003 14 565 Carbohydrate Esterase AT4G02330 62.456 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1444g00003 K01051 - gmx:100800971 885.56