Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1443g00006 ATGTTTCACGGGTCTCCCTTTATGATCTGCGGGATGTCAGAAAGCATGTATCATAAGTGGTTTTTTAACCATACCCACTTGAAGATATCTTGGATTCATCATCAAATCCAGCAAAAAGATGTTTACTCGAGCTACCCACCTCCTGTTTTGCCTTCATCTTCGCCTCCATATCCTGGTGCTTTCCACAGAGAAACAGGGTCTTCTTCCTCGTCTGGTACTAGAATTAGTCCGGCTGTTCTTTTCATTATAGTGATTCTAGCCGTGCTCTTTTTTATTTCTGGTCTTCTACACCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCCTCGGCATCTGAGTCTAATAGACACCAGGAAATCTCAACCTCCGATGCTCTTCAAAGACAACTCCAACAGCTCTTCAATCTTCACGACTCTGGTCTGGATCAAGCTTTCATTGACGCACTTCCTGTTTTCCAGTATAAAGAGATAGTTGGTCTGAAAGAACCATTTGACTGTGCTGTGTGCCTGTGTGAGTTTTCAGAGAAGGACAAGCTCAGATTGCTTCCAATGTGCAGTCACGCCTTTCACATCAATTGTATAGACACATGGCTTCTATCCAATTCCACATGTCCACTTTGTAGAGGAACCCTTTTAAATCCTGGGTTTTCAATTGAAAACCCCATGTACGATTTTGACGATCTAAGGGAAGAGGATGGGTGTAACGCTGAAAACGGGTTCACAAGTTTTAGACAAAAAACTGTTGAAATTGAAGAAACCGTAGAGAAAGGAGTGTTGCCTGTAAAACTTGGTAAGTTCAGAAGGCTGAATGTGGAGGCGGGGGAGGGTGGAGGAGAGACGAGTAGCAGTAATTTAGATGCAAGAAGATGCTACTCAATGGGATCTTACCAGTATGTGTTAGGCAATTCAGACCTCCGAATTGCCTTGAACCATGACCGTCCAGGCCGCGAGGTAAGGCTTATAGAAGGACAAGAACAATCTGAGAAGCTTTCCATGGAGGAAGCAAAGAAGATTAGAAGTGTGAGTAAAGGTGAGAGCTATTCTGTTTCCAAGATCTGGCAGTGGTCCAAGAAGAGCAAGTTTTCTACTTCGTCCGAAGAAGATCAAATGGGGATGGGCATGCCATCTTCTCTTAATACGGACCTGCCATGGATGAGAAAAACAGAAGGAACATGA 1176 0.4362 MFHGSPFMICGMSESMYHKWFFNHTHLKISWIHHQIQQKDVYSSYPPPVLPSSSPPYPGAFHRETGSSSSSGTRISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSASESNRHQEISTSDALQRQLQQLFNLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRGTLLNPGFSIENPMYDFDDLREEDGCNAENGFTSFRQKTVEIEETVEKGVLPVKLGKFRRLNVEAGEGGGETSSSNLDARRCYSMGSYQYVLGNSDLRIALNHDRPGREVRLIEGQEQSEKLSMEEAKKIRSVSKGESYSVSKIWQWSKKSKFSTSSEEDQMGMGMPSSLNTDLPWMRKTEGT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1443g00006 391 MobiDBLite consensus disorder prediction 359 384 - -
Pral1443g00006 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 213 IPR013083 -
Pral1443g00006 391 SMART ring_2 166 207 IPR001841 -
Pral1443g00006 391 MobiDBLite consensus disorder prediction 359 391 - -
Pral1443g00006 391 CDD RING-H2_EL5-like 165 208 - -
Pral1443g00006 391 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Pral1443g00006 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 70 353 - -
Pral1443g00006 391 SUPERFAMILY RING/U-box 145 213 - -
Pral1443g00006 391 FunFam RING-H2 finger protein ATL46 128 213 - -
Pral1443g00006 391 Pfam Ring finger domain 165 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1443g00006 Pral-Chr1443 32434 34382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1443g00006 63 368 C3H Transcription Factor Family AT2G18650 40.456 7.57e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1443g00006 - - qsa:O6P43_004596 529.635