Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1442g00007 ATGCCACGTATATCACTCCTAAGACATTTGAATGATGGAACCGATAGGTGGCACATAGTTGCAAGAGTTTTCAGGAAATGGAATGTCTTCCATAAGGGATCATCTGCTGATATCTTCTGCGTGACAATGGTTTTATTAGACAAAGAGGGGGATAAAATACAAGCAAGTGTTCTAACCAAAAGTTTACATGACAAGTTTCGCCACAGTATCATTGAAGGAGAGACTTATTTCTTTGCTAATTTTGAGGTCTCTGCTAATGTTAGCCAATATAGAGCTACCACTCATCCTTTCAAGATCACTATAACTCCACGAACACATGTTGCTGAGAAAATAGCCATTGTGCCATCTTATTCCTACTCTTTCTTTCCACTTGCTGAGATAGAGAAACTCAATGAGAAGTATAATATTGAATACTTGATAGACGTTTTAGCATTTGTCAAATCAATTGGCACTCTTGAAGAATATCGACGGGACAATGAAACCAAGAATAAATTGAGGATGGTGCTGAGTGACATTGAGTACAGAACCTTTCACGGAATCAATGTAGAATGTATATTATTTGATGAATGTGCCAGCGATGCTTTCATGTCTCAGCTCCAGAATACACAGACACCTGTTGTGGTGTTGTTAAACCTGGCTAGGGTTGGTTTTTCAGAAGATGGAAGAGCACAGGTTTGCAATTCTTTTAATGCCACAAGGGTGTTTTTCAACCCACCCATCAAGGAAGTGCAACTAATGATTGATAGTTCAAAAGACAATGGCTCTCCAAGTTTGTCCTTCCTTAGCCAGCCCGTACTAACTCCACTGAGTCAACAGTCACGTACTAGCATCAATTGCAACCAAAGCCCGATTGCTATATCAAACATAAAAGATCAACCCATGGGAGAAACTTTTGTCATTAGGTGCATTATTCAAAAGTTAGAGACCAGATATGGTTGGATCTATCAAGGTTGCTCCAAGTGTGGTACAAAGCTTCGTTTAGAGAATGAGAGTTGGATATGCCCATCATGTCAGAAGAAACCAGAGTTTATTGACCACAAGATGAAGCTTCATTACACTGTGAAAGATGAGACAGGAATTGCTTCAATAATATTCTGGGATAAACTTGCGGTTGAGTTAATTAAAAATTCAGCCGCTGAGTTGAAGGTTATTCTAGATGAGGATCCTGAGGAAGTTGATTTCCCCAAAAATCTGGACAATCCTGTTGGGAAGAGTATGTTGTTGACTCTTAAACTGAATGACTACAATAAACGACATCCAAGTTCCAGTATTAGTGTGATGCAATATCATTTATGTGAAGATTTAATGGATCAATTTACTGAGGCATCCATTGAGTATTCACAACCTGCTGTGGAACAAAGTCAGGAACATATGAATGTTACTCAAGGAGTTCCTCTAATTGCGGAAAAAGATTTAGTTTCACAATGTGTTGCTGAAGAGGATGTCACACTTTCAAATATGGTCAACCGTGTTAAAGCTCCTCCAGTTAAAGGGAGAAAAAGAAGCGTCGTGAGGAAGAATGTTGAGGATGCTATTGCTGAGGGTACTAACACTGGATCAAGCTCAAGTAATGAACAGAAGCATGTGAAAACTATCAAGTTGGAGAAGTAG 1611 0.3911 MPRISLLRHLNDGTDRWHIVARVFRKWNVFHKGSSADIFCVTMVLLDKEGDKIQASVLTKSLHDKFRHSIIEGETYFFANFEVSANVSQYRATTHPFKITITPRTHVAEKIAIVPSYSYSFFPLAEIEKLNEKYNIEYLIDVLAFVKSIGTLEEYRRDNETKNKLRMVLSDIEYRTFHGINVECILFDECASDAFMSQLQNTQTPVVVLLNLARVGFSEDGRAQVCNSFNATRVFFNPPIKEVQLMIDSSKDNGSPSLSFLSQPVLTPLSQQSRTSINCNQSPIAISNIKDQPMGETFVIRCIIQKLETRYGWIYQGCSKCGTKLRLENESWICPSCQKKPEFIDHKMKLHYTVKDETGIASIIFWDKLAVELIKNSAAELKVILDEDPEEVDFPKNLDNPVGKSMLLTLKLNDYNKRHPSSSISVMQYHLCEDLMDQFTEASIEYSQPAVEQSQEHMNVTQGVPLIAEKDLVSQCVAEEDVTLSNMVNRVKAPPVKGRKRSVVRKNVEDAIAEGTNTGSSSSNEQKHVKTIKLEK 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1442g00007 536 SUPERFAMILY Nucleic acid-binding proteins 284 412 IPR012340 -
Pral1442g00007 536 Gene3D - 114 257 IPR012340 -
Pral1442g00007 536 Pfam Domain of unknown function DUF223 43 123 IPR003871 -
Pral1442g00007 536 PANTHER OS03G0429900 PROTEIN 6 461 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral1442g00007 536 CDD RPA1_DBD_A_like 19 107 - -
Pral1442g00007 536 Pfam Replication factor-A C terminal domain 298 393 IPR013955 -
Pral1442g00007 536 SUPERFAMILY Nucleic acid-binding proteins 119 252 IPR012340 -
Pral1442g00007 536 MobiDBLite consensus disorder prediction 513 527 - -
Pral1442g00007 536 Gene3D - 269 438 IPR012340 -
Pral1442g00007 536 MobiDBLite consensus disorder prediction 498 536 - -
Pral1442g00007 536 SUPERFAMILY Nucleic acid-binding proteins 6 109 IPR012340 -
Pral1442g00007 536 Gene3D - 3 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1442g00007 Pral-Chr1442 89349 91974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1442g00007 3 416 Core DNA Replication Machinery Family AT5G08020 23.041 1.90e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1442g00007 - - pcin:129290097 480.33