Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1440g00001 ATGGACTGTGGCACTGGAGATGGGCCAAAGTGGTCATTCTCATGTGCGTCGCCGCGAGATGAGATAGACTCGACGACGCAGCCTCCCCAGTTCTCAGCAGCTTATTACATCGAAGATTATGAAGCGACGGGCTTGCCTGTGCCGCCACCTGAGCTCTGTGGAACTACACCAGCGATCGGCAAACCTAACTGGTGGTCACTCGCAAGTACAACAAGCACATCATCGTCGCTGGGAAACCCTACGCCACAACAGCAAGAGCAAGACTTGACGGAAAGAGGGAAGAACCCCATGAGGGAGATGATATTTAGGATAGCAGCGATGCAGCCAATACACATAGACCCGGAGTCAGTGAAGCCTCCAAAGAGGAGGAAGGTCAAGATATCAAAGGACCCTCAAAGCGTGGCGGCTCGCCATCGCAGAGAAAGAATCAGCGAGAGAATAAGGATATTGCAGAGATTGGTGCCAGGTGGCACTAAAATGGACATCGCCTCTATGTTAGACGAAGCTGTTCACTACCTCAAATTCCTGCAGTCCCAGGTTCACTCCCTCCAACGAGCAACCTCAAACAATACCCCACCACCACTCCCTCTCTTCATGTCCTCTCCCCCCAATCCTTCCTCTTATTATCTTTCTCTGCATAAGCTTTCTCAACCTCCTCCTAACCCGAACCACTTTTGCTGA 681 0.5154 MDCGTGDGPKWSFSCASPRDEIDSTTQPPQFSAAYYIEDYEATGLPVPPPELCGTTPAIGKPNWWSLASTTSTSSSLGNPTPQQQEQDLTERGKNPMREMIFRIAAMQPIHIDPESVKPPKRRKVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDIASMLDEAVHYLKFLQSQVHSLQRATSNNTPPPLPLFMSSPPNPSSYYLSLHKLSQPPPNPNHFC 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1440g00001 226 MobiDBLite consensus disorder prediction 114 139 - -
Pral1440g00001 226 Gene3D - 123 191 IPR036638 GO:0046983
Pral1440g00001 226 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 41 205 IPR045843 GO:0003700|GO:0006355
Pral1440g00001 226 SMART finulus 133 182 IPR011598 GO:0046983
Pral1440g00001 226 MobiDBLite consensus disorder prediction 64 93 - -
Pral1440g00001 226 Pfam Helix-loop-helix DNA-binding domain 137 177 IPR011598 GO:0046983
Pral1440g00001 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Pral1440g00001 226 MobiDBLite consensus disorder prediction 115 139 - -
Pral1440g00001 226 MobiDBLite consensus disorder prediction 64 90 - -
Pral1440g00001 226 MobiDBLite consensus disorder prediction 1 29 - -
Pral1440g00001 226 FunFam BHLH transcription factor 130 193 - -
Pral1440g00001 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 187 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1440g00001 Pral-Chr1440 8102 8782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1440g00001 97 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 87.500 1.45e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1440g00001 HLH 6.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1440g00001 - - pcin:129317624 255.758