Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1439g00005 ATGGTTCTACCCGTTTATTTCTTCTTCGTCTTCTTCTTCTTCTTCTTGTTCGCTGACCTTGTGCTTCCTCTATCCTCTGCCTCTGGAGATTGCCCACCTTTCTTTGACTGTGGGAATCTAGCGAAGCTCTCGTTCCCTTTAACCACTCCCCAACGTAAAGACTGTGGAATGTTGCCGATTCATGGCTGTGAAGACCCCAACGCTCAAAAAACTGTGCTCTTTGGGAAAAAGATGCTTCAAGTGATAAGAATAGACGCTTCCAGTACGGTAGTTTTCGTCAGAGACGCAGATTTACGGAAGCGTTTGGTAAATAATAGCTGTGATGCCTTGTGCCGCAATGTTACACTCCCTCCTAAGTCACCCTTGGGTTCGTTTTCCATAATTCAACACATAACAACCTTTTACAAATGCAATATCACGCTCACAGTTAGCGCTCCAAAGCAATTCTTGAACTATACCGGATGTGGTAAGAGTAACAATGAGATCATCTTCTTCCAAGCGCAAGATGAAGAAGATCCTCCACCTGCTTTGGCAAGATGTCCAAGGGTTCGGGTTCCAGTGAATTCCCTGGCTTTCTCTACAGATTTATCCACATTAATAGCTTCTGAATTTGCCGTTTTAATTCAGCTTTCTCATGACTGTATTCTATGTGTTTTTGACAAAGGCTCATGTCGGCTCAACAGCTCCGGAGGATTTTATTGTCTCAAATTCAAAGATGAAACTGAGACAGAAGATCAGAATAACAGACGGGCTTGGAAGCTGGGGTTGATAATGGGTATTGGAGCGGGATTAGGAATTCTCATATTAGCATTGCTGCTCTGCTTCGGACTCTACAAACAGAAACACAGTGCTCTGTCTCACGTCAGACTCCGATCAGCAAACCAGTACCCAAATGATGCAGACCCGGACAGTGGGAGACTCTTCTTTGGGGTCCCAATCTTCTCCTACATGGAGCTTCAAGACGCAACAAAAAACTTTGATCCCTCCAACAAACTTGGAGACGGAGGCTTCGGCTCTGTTTTCTATGGGAAGCTTCAAGATGGGCGTGAAGTTGCAGTGAAACACCTATTCAACCACAACTACAAGCGAGTGGAACAGTTTATGACTGAAGTTGAGATCCTCACTCGCCTACGTCACAGAAATCTTGTCTACCTCTATGGCTGCACTTCACGTCAGAGCCGTGAGCTCCTTCTTGTCTATGAATACATCCCAAATGGCACCCTTGCAAGTCACCTACGTGGCAGCTCTGCAAATCCTGCATTGTTGACATGGCCCGTTCGAATCAAAATCGCCGTAGAAACTGCCAGTGCTTTGGCTCACCTTCATGCTTCCGGCATCATCCACCGTGACGTCAAAACCAACAACATTCTTCTTGACAAGAACTTCTGTGTTAAGGTGTCAGATTTTGGACTTTCTAGGTTGTTCCCAGATGATGTCTCGCATGTTTCTACAGCTCCACAAGGAACACCAGGCTATCTTGACCCAGAATATCACTATTGTTTTAGGCTGACCAATAAAAGCGATGTGTATAGTTTTGGGGTTGTGCTTATAGAGCTGATATCTTCAATGCCAGTAGTTGATATGGGAAGGAATAAAGATGAGATTACATTGGCGAGCCTTGCAATTCGGAAAATTGAGAGGAACGAACTTGAGGAGCTGGTGGATCCGTGTTTGGGGATTGAGAAAGATAGTGAGGTGATGAAGAAGGTGTTTGCAGTGGGGGAATTGGCATTTCAGTGTTTGCAGGTAAATAACGAGATGAGGCCTTCCATGGATGAAGTTTTAGAGATTTTGAGGGAAATTGAGAGTGAGAAAGAAGAAGGTAGGGATGTAGAGGAAGGTGAGGCTAATGCAGATACACGATTTGGGGGGACTCCAATAAGCTATGATCAAGTAGAAATGGTGAAGGCATTGTCTTCACCAAATAGTGTCACCGTAAAATGGAGCAGTGAATCTACTGCTAATTTCAGCCTTTAA 1977 0.4461 MVLPVYFFFVFFFFFLFADLVLPLSSASGDCPPFFDCGNLAKLSFPLTTPQRKDCGMLPIHGCEDPNAQKTVLFGKKMLQVIRIDASSTVVFVRDADLRKRLVNNSCDALCRNVTLPPKSPLGSFSIIQHITTFYKCNITLTVSAPKQFLNYTGCGKSNNEIIFFQAQDEEDPPPALARCPRVRVPVNSLAFSTDLSTLIASEFAVLIQLSHDCILCVFDKGSCRLNSSGGFYCLKFKDETETEDQNNRRAWKLGLIMGIGAGLGILILALLLCFGLYKQKHSALSHVRLRSANQYPNDADPDSGRLFFGVPIFSYMELQDATKNFDPSNKLGDGGFGSVFYGKLQDGREVAVKHLFNHNYKRVEQFMTEVEILTRLRHRNLVYLYGCTSRQSRELLLVYEYIPNGTLASHLRGSSANPALLTWPVRIKIAVETASALAHLHASGIIHRDVKTNNILLDKNFCVKVSDFGLSRLFPDDVSHVSTAPQGTPGYLDPEYHYCFRLTNKSDVYSFGVVLIELISSMPVVDMGRNKDEITLASLAIRKIERNELEELVDPCLGIEKDSEVMKKVFAVGELAFQCLQVNNEMRPSMDEVLEILREIESEKEEGRDVEEGEANADTRFGGTPISYDQVEMVKALSSPNSVTVKWSSESTANFSL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1439g00005 658 FunFam Wall-associated receptor kinase-like 20 403 611 - -
Pral1439g00005 658 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Pral1439g00005 658 Pfam Protein tyrosine and serine/threonine kinase 330 597 IPR001245 GO:0004672|GO:0006468
Pral1439g00005 658 SMART serkin_6 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1439g00005 658 Gene3D Phosphorylase Kinase; domain 1 301 402 - -
Pral1439g00005 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Pral1439g00005 658 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Pral1439g00005 658 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 652 IPR044652 GO:0004672
Pral1439g00005 658 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 309 402 - -
Pral1439g00005 658 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1439g00005 658 SUPERFAMILY Protein kinase-like (PK-like) 306 598 IPR011009 -
Pral1439g00005 658 CDD STKc_IRAK 332 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1439g00005 Pral-Chr1439 41085 43651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1439g00005 35 654 Receptor kinase-like Gene Family AT1G25390 42.880 2.82e-153 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pral1439g00005 PK_Tyr_Ser-Thr 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1439g00005 - - aprc:113871894 592.038