Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1432g00007 ATGTCTCTGAGAAGCGTTTTTCGGTCTCGGAAATTCTGTAGATCCTTCAAGGAGGTTAGGGCTATCGAGGAAGATGAGCGGAAGGGGCGGCTTGGCGGTGATTCTGACAACGGTGAGTCCCCTCCATACGGCCGTTCATGGGCCACTATGCTGCCGGAGCTTCTTGGGGAGATCATTCGCCGGGTTGAGGCCACCGAGGACCAGTGGCCCAACCGCCAAAACGTCGTTGCTTGCGCCTGCGTGTGCAAGAGGTGGAGGGATATCACTAAGGAGATCGTGCGGTTCCCTTCTCGCGACAGCGGCAGAATAACTTTTCCTTCTTGCCTCAAGCAGCCAGGACCACGTGACGTCCCTCACCAATGTATTATAAAGAGGGATAAGAAGACTTCGACATTTCACCTATACCTTGCCCTTACTCCACCATCATTCACAGATAGAGGTAAGTTTCTCTTGGCAGCTAAGAGATATAGGCGTGGTTCTGGTATCGAATATATACTTTCACTTGATGCTGATGACATATCGCAAGGAAGTAAAGCTTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACCAACTTCACAATTTATGATAGCCAGCCTCCCCATTGTGGTGCAAAGCCATCAAATGGCAAGGCCAGCCGTCGTTTTGCCTCCAAGCAAATAAGCCCTCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCAGGTATCGTACAAGTTCAACCTTTTGAAGTCAAGAGGGCCAAGGAGGATGGTTTGCTTACTGAAGTTCCCAAACCAATCATCAGGAGAAAGTTCAGATAGCAGATCTCTGGGTGCTCACAAGACGAGCAATACAGAACAAGCTGCCTCACAATACTCAATCTTGAAAAACAAAGCTCCGAGGTGGCATGAACATTTGCAATGCTGGTGCTTAAATTTCCACGGTCGTGTGACTGTAGCATCAGTGAAGAACTTTCAGCTAGTTGCGACGGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTTCAATTTGGGAAAATAGGGGATGATACCTTCACTATGGATTACAGGAAGCCCTTGTCTGCATTTCAGGCCTTTGCCATATGCCTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1134 0.4841 MSLRSVFRSRKFCRSFKEVRAIEEDERKGRLGGDSDNGESPPYGRSWATMLPELLGEIIRRVEATEDQWPNRQNVVACACVCKRWRDITKEIVRFPSRDSGRITFPSCLKQPGPRDVPHQCIIKRDKKTSTFHLYLALTPPSFTDRGKFLLAAKRYRRGSGIEYILSLDADDISQGSKAYVGKLSSDFLGTNFTIYDSQPPHCGAKPSNGKASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCLLKFPNQSSGESSDSRSLGAHKTSNTEQAASQYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLQFGKIGDDTFTMDYRKPLSAFQAFAICLTSFGTKLACE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1432g00007 377 Pfam F-box domain 52 94 IPR001810 GO:0005515
Pral1432g00007 377 SUPERFAMILY Tubby C-terminal domain-like 100 377 IPR025659 -
Pral1432g00007 377 PANTHER TUBBY-RELATED 39 375 - -
Pral1432g00007 377 MobiDBLite consensus disorder prediction 258 278 - -
Pral1432g00007 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Pral1432g00007 377 Gene3D Tubby Protein; Chain A 104 377 IPR025659 -
Pral1432g00007 377 CDD F-box_AtTLP-like 47 91 - -
Pral1432g00007 377 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Pral1432g00007 377 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Pral1432g00007 377 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Pral1432g00007 377 PRINTS Tubby superfamily signature 288 305 IPR000007 -
Pral1432g00007 377 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Pral1432g00007 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Pral1432g00007 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Pral1432g00007 377 MobiDBLite consensus disorder prediction 26 45 - -
Pral1432g00007 377 ProSitePatterns Tub family signature 1. 306 319 IPR018066 -
Pral1432g00007 377 Pfam Tub family 109 372 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1432g00007 Pral-Chr1432 33813 37311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1432g00007 46 377 TUB Transcription Factor Family AT1G53320 76.696 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral1432g00007 Tub 2.2e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1432g00007 K19600 - qsa:O6P43_029189 608.986