Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1422g00011 ATGTCGAAATCATTATATCTAACTCATGTATCGTTCCTCTTATCTAATTCTAGAGTCATGGCCTCTGGCAGAGTTTTCTATCATGCGCTTCCATCTACAAAATTCACATCATTCAACAAAGCGGACACTATCTCTCTATCACGCTCCCTACGAACCTTCTCCACCACTCGAACCCCTTACCCACTTCAGTACGAGATGATTATCAGCCGTCCAGTCAATTCTGTGCATGCCCATTCTCGCCGTCGAGCTGTTCGACAAAATGACCCCAATGCAGAGGGCTTCCCTGACTCGGAGTCTCCGGAAGAGTCCGTTTCTCCCGCAGAGTCCGTCTCTGAATTGGGATTAGATAGCTGGGTTGATCGGAAATTGGCTTCTGAGGAAGAAGCTAACCAACCCGGTTCCCAAAAATCGGAGCTTGACAAGGCTAAGAAAAAATATTACAGAAAACGGAGGAAGAGGATGTATGGGTCGGACTCTGATGAAGCAAATAGACGACCTGAAGAGAAGTTCGTGGAACTGAAGCCTGAGGTGGTAGAGCTTCCTACATTGCACAAGAAGGAGGAGGAATTGTATTTCTACGATACGTTTTCTTACCCGTGGGAGAAGGAGAAGCACTATAAGATGGTCTATCAGTTGGAGAAGAAATATTTTCCTGATCAGTGTCTTGATAAGGCGTTCCTAGAACCGGGAGAAGCAAATGCAAACGTGAATGTAAATATCGATGCAAAGACTAAGAGCAAGGTGAGGGAAAAGAAGAAAGTCAGGAAAGATAGAAGGGAGAAAAAAGATGAGGTTGGTGATGAAAGAAATGATTCCAAGTTGATATTCTTCGGGGAGAAAAAAGAAGAAGAGGATAATAGAGGACAGGTTAAGGAAACAAGAGAAGATCTAACCGAAAAGAAAGTCGAAGAGTTCTTTAAATATTTGAAGAAAATTCCGAATAAGGATGTTGAAGTGGGTAATGCTGAGCCGTTTCTTGCGTCAAGGAATTCTGGTCTTCCTCCTAGATGGGATGGTCCTCATGGAACCGTTATTTTGGTGAATAAACCCAAAGGTTGGACTTCATTTACAGTTTGCGGAAAGCTGCGTCGCTTAGTCAAAGTGAAAAAGGTAGGTCATGCTGGAACTCTTGATCCAATGGCTACGGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAATTGGTGGAGAGCTATCAAGGCATGATTAAGGGCTATAGTGGAGTTTTCCGACTAGGGGAGGCTACGTCAACATGGGATGCTGATTCACCGGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGAAATAAAGAGAACTGTAGCATCCTTTTGTGGGGAGATTTGGCAAGTTCCCCCAATGTTCTCTGCCATTAAGGTTGGAGGTGAGAAAATGTACGAAAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGTTTGGATGATAGGCAAAATTTGATTTTTAGGGTAACATGTTCCAAAGGAACATATATTCGGTCACTATGTGCAGATTTTGGGAAAGCTCTTGGCAGTTGTGCCCATTTAACTGCTCTCCGGAGAGATTCAATAGGAGAATATTCGGCAGACGATGCATGGGACTTTGCAGAGCTGGAAGAGGCTATTTCCAAAAGTTATTTCTAA 1686 0.433 MSKSLYLTHVSFLLSNSRVMASGRVFYHALPSTKFTSFNKADTISLSRSLRTFSTTRTPYPLQYEMIISRPVNSVHAHSRRRAVRQNDPNAEGFPDSESPEESVSPAESVSELGLDSWVDRKLASEEEANQPGSQKSELDKAKKKYYRKRRKRMYGSDSDEANRRPEEKFVELKPEVVELPTLHKKEEELYFYDTFSYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLEPGEANANVNVNIDAKTKSKVREKKKVRKDRREKKDEVGDERNDSKLIFFGEKKEEEDNRGQVKETREDLTEKKVEEFFKYLKKIPNKDVEVGNAEPFLASRNSGLPPRWDGPHGTVILVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEEIKRTVASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGEYSADDAWDFAELEEAISKSYF 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1422g00011 561 Hamap tRNA pseudouridine synthase B [truB]. 341 561 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pral1422g00011 561 FunFam tRNA pseudouridine synthase B 338 560 - -
Pral1422g00011 561 MobiDBLite consensus disorder prediction 78 112 - -
Pral1422g00011 561 Pfam tRNA pseudouridylate synthase B C-terminal domain 514 557 IPR032819 -
Pral1422g00011 561 Pfam TruB family pseudouridylate synthase (N terminal domain) 363 513 IPR002501 GO:0006396
Pral1422g00011 561 MobiDBLite consensus disorder prediction 153 167 - -
Pral1422g00011 561 NCBIfam tRNA pseudouridine(55) synthase TruB 343 552 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pral1422g00011 561 MobiDBLite consensus disorder prediction 245 266 - -
Pral1422g00011 561 Coils Coil 280 300 - -
Pral1422g00011 561 MobiDBLite consensus disorder prediction 125 142 - -
Pral1422g00011 561 SUPERFAMILY Pseudouridine synthase 343 555 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pral1422g00011 561 Gene3D Pseudouridine synthase 339 560 - -
Pral1422g00011 561 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 215 559 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pral1422g00011 561 CDD PseudoU_synth_EcTruB 344 555 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pral1422g00011 561 MobiDBLite consensus disorder prediction 125 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1422g00011 Pral-Chr1422 47056 51484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1422g00011 309 535 NAC Transcription Factor Family AT3G57150 32.599 3.12e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1422g00011 K03177 - qsa:O6P43_004707 805.438