Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1418g00001 ATGTTCACTAGCCATCTTTGCGATGCTCTTCGCAGAAGTAAAATAGAAACATTCGTCGACGACGGAATTGAGAAAGGAGATGAGGTATGGCCATCTCTTGAGAAAGCCATTGAAGATTCAACTCTGTGCCTTGTGATCTTCTCAGAAAACTATGCATCTTCCACATGGTGCTTGAAGGAGCTTACTAAAATATTGGAGTGCTCCAAAAATCAAGGTCACCTTGTTGTGCCGGTGTTCTATAAAGTAGATCCTTCGCATGTGAGGAAGCAATCTGAGAGTTATCAGAAAGCATTTGAAGAACTTGAGGGCAAAGGCATCAGCAAGCGACTACTGCATCAGTGGAGGAAGGCTCTCGCTGAAGCTGCTGGTATATCTGGTTTCCCCATCACCAATAGAGTTAACGAAGCAGACAAAATTAAAGAAATAGTGGAAAGCGTTAAAGAAAGGTTGCACAAGCGGTATCCAAGTGAATATAATAGAGAAGACTTGATTGGAATTGAAGAGAGAATGAAACATGTAGAATCATTGTTGGACAAGGGGTCGAAGGATATCCGGATTATTTGCATTTGGGGGATGGGCGGTTTGGGCAAAACAACTCTTGCAGAAGCATTGTATAAGAAGTGGCATTTTGAATACGAAGGGTCAGTCTTTGTGGAAAAAGTGGGAGAAAAATCAAAGAAAGATGGAATAGATGCTTTAAGGAAGGAGCTTATTTGGAGTTTATTAGGGGATAAAGCAATATATTCTCATACAATGACTAGGCTTAGTCGGAAAAAGGTTTTCATTGTGCTTGATGATGTTGATGATATTGAACAATTAGAAAATTTAGTTGGAAGATGTGAATTTGGATCAGGTAGCAAAGTCTTAATAACAACCAGAGATAAACAAGTGCTTCGTAAGAAAGTGGATGACATATATGTGCTTCATGGTTTGGATCCTGATGAAGCTTTTCAACTTTTCTCCTTGAATGCCTTCAAAAAAGGCTACAGTGATCCAAAGATAAGAGGGCTAGCAGAACAAGTGACTGAATATGCAGGTGGAAATCCATTGGCCCTAAAGGGAAGTATTGAAGGCATGATTATGGACCTTTCGGAAGTTGAAGAGACGGGCGTTATTATTAAAGCATTTCGTTCAATGCCCAATCTAAAGTTTCTTAGGGTTTATGGAAATTTAAATGTTCAGCTTAGGAACAAGTTAAATGCTTCTGGCATGATGTTTTTGTCAAAAAACCTCATGCTATTGGATTGGGTGGGATGCCCTTTAAAGACCTTGCCGACAACATTCAAGGGTGAAAATCTTATTGAAATAAACATGCCCTTCAGCAAATTGACAAAACTTTGGGATGGAGAGCAGAATGTTCATCCATCTATTTTATCTCTCCATAGCCTTTCTTGTTTAGAGCTAACAGGTTGCACAACCCTTGCCAGCCTCACAAGCAACACCCATCTCAAATCACTGTGTATGCTCAACTTGACAGGATGCTCAGGACTAAGTGAATTTTCGGTGACCTCAGAAAAACATTTGTTTGTCTTGGTGCTTCGTGACGCAACCATCAATGGTGAGTTGTGCTCATCAAGCGGACATGTCAGCAAAATTGATGTTTTGGACCTAGGAAGATGCGAAGGTGTGACAAGTCTTCACAAATTGGTTGACATGCGCACGCTTCGACGCCTTCATGCTGATTATTGTAATAAGTTAGCATCAAATCTGTGTTCCAAATTTGATGAGATGCGTGCTTTGCAATTTCTACGGCTTACTAATTGTAGTGAATTATATGAAGTTCCTGACAACATCAGCTTGTTGGCGTCATTAAGTCTGTTAGATCTCTCAGGGAGTAATATAGAGACCTTGCCTTTAAGCATCAAACATCTTTCAAGCCTAGAAAGTCTCACCTTAAATGGATGCAAAAGGCTTCTGTCTCTACCACAACTCCCTCCCTCTATCTCACTACTGTACGTCAATGACTGCCTGTCCCTTGAGACTTTACATTTACCTTTAATGAGTGAAGATAGAGAAGGAGATCAATTTTCTCATGAAAGATTCAGTTTCAGAAATTGCATGAAGTTGGATGGGCAGTCAATCAAAGCTGTTGAGGCCAGAGTGCTACTTGCCATAAATAACAACAAAGCCATTTATTTCTGGGCTAACATGGAATATCCGGGAAGAAGAGTTGCAGAGTGGGTCATGTATAGGACTACACAGTCTTTCCTGACTGTGGATCTCAGTTCGATTCCACAACCTTGGGATGGCGCTTTCATTTTTTGCGCCGTCATTTCTGGATCATCGCGGTGGACAAATATTACAGCCGAATTGTTTATTGATGGTCAACATGCTTCCACGTTTGAGCACTGCTCTGTCGGTGAGTCCCTGTTATCAGATCATGTTGTTCTTTGGTACGCTCAAAGGCAGTGTCGAGAAGTACAAAGGAAAATTGAAGAAAAGAAAATAGAAGCCCAAAGCAACACTTCTTATCATCCATTGCTTCAATTTGAATTCGCAGCCTTTTCGCTTGATGATGATGAAACAACAGTAGAGATCAAAGAGTGGGGGCTCTCAAGTTCAATTCATCTGCCCACTATTCAACTTTATATATCACTCTCGCGCCTCGACCTCAAAATGATTGAGAAAGAAAAGGATTTATGGACATTGAGGAAGCCACTGAAGGAGCTTGCAAATATGAAGAATATGAGAAGAACAAGAAACAACAGGCGATCTGCTATGGCTTCATCTTCTTCCTCTGCTCCATCTCCCAAGAAATATGATGTTTTTATTAGTTTTAGAGGTGAGGACACCCGCTTGAATTTCACAAGCCATCTTTATCGTGCTCTTTGTGGACAAAAAATATATGCATACATCGATGACAGCCTCGAGAAAGGAGATGAGTTATGGCCATCTCTTGAGAAAGCCATTGAAGATTCAACTCTGTTCCTTGTGGTGTTCTCAGAAAACTATGCATCTTCCACGTGGTGCTTGAAGGAGCTTGCAAAAATATTAGAGTGCTGCAGAAATCAAAGTCACCTTCTTATACCTGTGTTCTATAGAGTAGATCCTTCAGATGTGAGGAAGCAACGTGGGAGTTACCACGAAGCATTTGAAGGACATGAGCGCAAAAGCAGCATCAACACGCAACAACTGCGCCAGTGGAGGGAGGCTCTCACTCATGCTGCCAATTTATCCGGTTGGCATTGTAGCCCCGATAGGAATGAAGCAGTGCTAATTGAAGAAATAGTGAATTGTATCATGAAAGAGTTGGACCGTAGGTATCAAAGTGAAGATCATCTAAAAGGCTTGATTGGAATTCACAAAAGAATGGCAGTTGTAGAATCAATGTTGGACAAAGGTTCAAAAAATGGTGGTTGCCAATTCATTGGAATTTGGGGGATGGGCGGTTTGGGCAAAACAACTCTTGTAAGAGCATTGTATGACAAGCGGCATTTTGAATACGAAGGGTCTTACTTTCTGGAAAAAGTGGGAGAAAAATTAAAAGATGGAATAGATGCTTTAAGGAAGGAACTTGTTTGTAGTTTATTGGGGGGTAAAGCAATATATTCTCATATCATGACTAGGCTTCGTCGGACAAAGGTTTTCATTGTGCTTGATGATGTTGATAATGCTGAACAATTAGAAAATTTAGTTGGAAGATGTGAATTTGGATCAGGTAGCAAAGTCTTAATAACAAGCAGAGATAAGCAAGTGCTTCGTACGAAAGTGGATGATAATAATATATATGCGCTTCATGGTTTGGATCCTTATGAAGCTTTTCAACTTTTCTCCTTGAATGCCTTCAAAACAAGCTGCAGTGATCCTAAGATAAGAGAGCTAGCAGAAGAAGTGACTAAATATGCAGGTGGAAATCCATTGGCTCTAAAGGTTCTAGGCTCCATCTTGCGGGCAAAAATCAAGAAGCATGGAAAAGCCAATTGGCAAAGCTTCAAAAATTGTTTTGTCCAGAAGTCATTGATATCCTCAGATTGA 3975 0.4055 MFTSHLCDALRRSKIETFVDDGIEKGDEVWPSLEKAIEDSTLCLVIFSENYASSTWCLKELTKILECSKNQGHLVVPVFYKVDPSHVRKQSESYQKAFEELEGKGISKRLLHQWRKALAEAAGISGFPITNRVNEADKIKEIVESVKERLHKRYPSEYNREDLIGIEERMKHVESLLDKGSKDIRIICIWGMGGLGKTTLAEALYKKWHFEYEGSVFVEKVGEKSKKDGIDALRKELIWSLLGDKAIYSHTMTRLSRKKVFIVLDDVDDIEQLENLVGRCEFGSGSKVLITTRDKQVLRKKVDDIYVLHGLDPDEAFQLFSLNAFKKGYSDPKIRGLAEQVTEYAGGNPLALKGSIEGMIMDLSEVEETGVIIKAFRSMPNLKFLRVYGNLNVQLRNKLNASGMMFLSKNLMLLDWVGCPLKTLPTTFKGENLIEINMPFSKLTKLWDGEQNVHPSILSLHSLSCLELTGCTTLASLTSNTHLKSLCMLNLTGCSGLSEFSVTSEKHLFVLVLRDATINGELCSSSGHVSKIDVLDLGRCEGVTSLHKLVDMRTLRRLHADYCNKLASNLCSKFDEMRALQFLRLTNCSELYEVPDNISLLASLSLLDLSGSNIETLPLSIKHLSSLESLTLNGCKRLLSLPQLPPSISLLYVNDCLSLETLHLPLMSEDREGDQFSHERFSFRNCMKLDGQSIKAVEARVLLAINNNKAIYFWANMEYPGRRVAEWVMYRTTQSFLTVDLSSIPQPWDGAFIFCAVISGSSRWTNITAELFIDGQHASTFEHCSVGESLLSDHVVLWYAQRQCREVQRKIEEKKIEAQSNTSYHPLLQFEFAAFSLDDDETTVEIKEWGLSSSIHLPTIQLYISLSRLDLKMIEKEKDLWTLRKPLKELANMKNMRRTRNNRRSAMASSSSSAPSPKKYDVFISFRGEDTRLNFTSHLYRALCGQKIYAYIDDSLEKGDELWPSLEKAIEDSTLFLVVFSENYASSTWCLKELAKILECCRNQSHLLIPVFYRVDPSDVRKQRGSYHEAFEGHERKSSINTQQLRQWREALTHAANLSGWHCSPDRNEAVLIEEIVNCIMKELDRRYQSEDHLKGLIGIHKRMAVVESMLDKGSKNGGCQFIGIWGMGGLGKTTLVRALYDKRHFEYEGSYFLEKVGEKLKDGIDALRKELVCSLLGGKAIYSHIMTRLRRTKVFIVLDDVDNAEQLENLVGRCEFGSGSKVLITSRDKQVLRTKVDDNNIYALHGLDPYEAFQLFSLNAFKTSCSDPKIRELAEEVTKYAGGNPLALKVLGSILRAKIKKHGKANWQSFKNCFVQKSLISSD 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1418g00001 1324 MobiDBLite consensus disorder prediction 898 917 - -
Pral1418g00001 1324 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 127 IPR035897 -
Pral1418g00001 1324 Pfam TIR domain 2 166 IPR000157 GO:0007165
Pral1418g00001 1324 Pfam TIR domain 919 1099 IPR000157 GO:0007165
Pral1418g00001 1324 Gene3D - 1089 1240 IPR027417 -
Pral1418g00001 1324 ProSiteProfiles TIR domain profile. 918 1084 IPR000157 GO:0007165
Pral1418g00001 1324 Pfam Leucine Rich Repeat 432 451 IPR011713 -
Pral1418g00001 1324 Pfam NB-ARC domain 168 353 IPR002182 GO:0043531
Pral1418g00001 1324 Pfam NB-ARC domain 1107 1313 IPR002182 GO:0043531
Pral1418g00001 1324 Gene3D - 1 147 IPR035897 -
Pral1418g00001 1324 PRINTS Disease resistance protein signature 254 268 - -
Pral1418g00001 1324 PRINTS Disease resistance protein signature 345 359 - -
Pral1418g00001 1324 PRINTS Disease resistance protein signature 186 201 - -
Pral1418g00001 1324 PRINTS Disease resistance protein signature 622 638 - -
Pral1418g00001 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1092 1312 IPR027417 -
Pral1418g00001 1324 Gene3D - 1248 1321 IPR042197 -
Pral1418g00001 1324 SUPERFAMILY Toll/Interleukin receptor TIR domain 909 1061 IPR035897 -
Pral1418g00001 1324 Gene3D - 917 1088 IPR035897 -
Pral1418g00001 1324 Gene3D - 148 306 IPR027417 -
Pral1418g00001 1324 MobiDBLite consensus disorder prediction 902 917 - -
Pral1418g00001 1324 FunFam Disease resistance protein (TIR-NBS-LRR class) 916 1086 - -
Pral1418g00001 1324 Gene3D Ribonuclease Inhibitor 360 502 IPR032675 -
Pral1418g00001 1324 Gene3D Ribonuclease Inhibitor 503 696 IPR032675 -
Pral1418g00001 1324 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 367 546 IPR044974 GO:0006952
Pral1418g00001 1324 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 152 - -
Pral1418g00001 1324 SUPERFAMILY L domain-like 360 707 - -
Pral1418g00001 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 354 IPR027417 -
Pral1418g00001 1324 SMART till_3 919 1058 IPR000157 GO:0007165
Pral1418g00001 1324 SMART till_3 2 124 IPR000157 GO:0007165
Pral1418g00001 1324 ProSiteProfiles TIR domain profile. 1 150 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1418g00001 Pral-Chr1418 324 22954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1418g00001 355 637 WRKY Transcription Factor Family AT4G12020 28.479 3.31e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1418g00001 - - pcin:129290874 456.447