Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1415g00005 ATGCCTCAGCAATCACCATTTTCCTCTTCGTTCTCCTATGGGTGGACTTATGATGTCTTTCTCAATTTCCGAGGTGAAGATACTCGCTTTGGTTTTGCTCGAAACCTCTACGAGGCTTTACAACAAAAGGCTATCCATACTTTTCTAGACAATGAAAGGCTTAGAAAAGGAGAAAAGATTACACCATCACTTCTTAAAGCAATCCAAAAGTCTAGAATGGCAATCACTATTTTCTCTAAAAACTATGCTTCTTCTACGTTTTGTTTAGATGAGCTTGTTCACATCCTTGAGCATATAAATAAAAAAGGTAGATTGGTTTTGCCCATTTTTTATGACGTAGATCCATCAGAAGTACGCCATCAAAGAAAAAATAATGGAGAAGTATTTGCTCAGCATGGAAGGAGGTTTAAAAATGACAAGGAGAAGGTGCAAAAATGGAGCTCGGCTCTACAAGATGCTGCTACTCTCTCGGGTTTCCATTTCAAACCTGGGTATCAATACGAATATGCTTTGATCAAAGCGATTGTTAAAGAGGTCACTAGGAGAATCAACCGAAAGCCTTTACATGTTGCTGATTATCCAGTTGGACTTGAGTATCGAGTGCAAAAAGTAAATTCTCTTCTCGATGTTGAATCTAGTGAAGGGGTCCAAATGGTAGGAATATGTGGCACCGGTGGAATAGGAAAATCAACAATTGCTCGAGCAGTATGCGGTTTGATTGTGGACTCATTTGAAGGGTTTTGTTTTCTTGCTGATGTCAGAGAAAATTCAATTAATCATGGCCTAGTGTATCTCCAGGAAATACTTCTTTCTGAAATGCTGGAGGAAGACGTTAAATTAAGAGATGTTAATCAAGGAATTCCAATAATAAAGCATAGGCTCCACAAAAAGAAGGTTCTTCTTGTTCTTGATGATGTTGATGAGCTAAAGCAATTACAAGCAATTGCTGGGGGACCTGATTGGTTCGGTTCTGGTAGCAGAATCATTGTAACAACAAGGGATAAGCATTTGCTAGTAAGCCATGGTGTTAAAAGAATTTATGAGGTAGACTTTTTAAATAGAGAAGAAGGTCTTGAATTGCTTAAATGGCATGCCTTTAAACAGAGTAGAGTTGATGCAAGTTACATGGACATTTTAAACCATGCGGTATTCTATGCGTGTGGTCTTCCATTGGCTTTGGAAGTTATTGGTTCCGATTTGTTCAGTAGAGAAATAAATTATTGGAATTCCGCATTAGAACATAGTATTCCAATTAAAGAGATCCAACAAATTCTGAAGGTAAGCTATGATGCTTTGGAGGAATATGAGCAAGAAAATTTTCTTGGCATTGCTTGTTGCTTTAAAGGTGACAGTTTTGAATATGTTAGAAGCGCTTTGTTTGCACGCCGTATATGCCCAGATTATGGTGTTAAAGTGTTGATTGATAAATGTCTGATAAAGATTAATCATGGTAAGGTGACCATGCATGATTTGATTCAAGCCATGGGTAAAGAAATTCTGCGACAGAAATCATCATATGAGCCTGGCAAGCGCACTAGGTTATGGCTTCATAAGGACATTCTCCATGTTTTAGAAGAAAACAAGGGTTCTGGGAAGATTGAAGCCATAAATCTAGACATGCCTGGAGATATAGTGATTGATTGGAGTGGAAATGCCTTCAAAAGGATGCCCAATCTTAAGATACTTATCATCAGAAATGCACAGTTTTCTACAGGACCCACGCATCTCCCCAACAGTTTAAGAGTGTTGGATTGGAAGGGATATCCTTGTCCATCTTTACCGTCTGATTTTAACCCCAAGGAGCTAATTATCCTCAAAATGCCGGAAACTTTCCTGCAACCGGATGTGCTACTCAACGCATGCAGACTTATTAAGACTCAGTTGTTTTTGATCTTGTCTCGCAGAATCCCAGATTTGAGGGAATTGTGTTTGGAATGCTGCAACAAGTTAATTGAGGTTCATGTGTCCATTGGATTTCTTGGTAAGCTTAAAAGGTTGAGTGTTAAACACTGCAGGAAGCTCAAGACCTTTCCAAGTATCAAGTTAACATCTCTAGAGTTTCTCGACCTTTCTTGGTGCTCCAGCCTCACAAGATTCCCAGAAGTCCGAGTTAATGGCACAGATGTTGGGTTTCCCGAAGGGCAAACAATTTTGTCATCCCTTACAACACCACACGTCTTTTTGTTTGATTTGCGGCGGTTTGTTCTCGAGGATAAACTGAGAAGTGTAGTTTCAGAGCGGGGATGGAACCATGTGGAGATATCCTGTGTCTTGAGTTACATAAATTGCTCCGATCCAATGGTTTTGGGTAAAATATATTGTATATCAAAGGCAAAATGGAGTGGAGCATATGTGTACAAGCAAAAGTCCAAAATGGAAGATATTCGATTCATAAATCTTTGCCAAGAAGCAGTATCGGAGTTGTCGAAAGGATCTTCCATGAATCCAGACAGTTTTACTGAGTCAGTCCTGCCTAGAATGAAGTGGTCTGACATGGATTTCAAAGTCAGTGGAGACAGTAACAACAATGCAGATATGTCCCTTTTATCCAAACCCATTGCTGAATCTCATTCAGTCACTGGAATAGAAAATAATATTAGGAAGAGGGACGGGAGAGATCTATCAATATGGGTCCCACCTCCTCTCACTCGTTCTCTTCTCTGTCCCTCTTGGATGAGAAATGAAGAATCAGAAGGAAAATGCTACGCTGTTACTAAGAAGTAA 2724 0.395 MPQQSPFSSSFSYGWTYDVFLNFRGEDTRFGFARNLYEALQQKAIHTFLDNERLRKGEKITPSLLKAIQKSRMAITIFSKNYASSTFCLDELVHILEHINKKGRLVLPIFYDVDPSEVRHQRKNNGEVFAQHGRRFKNDKEKVQKWSSALQDAATLSGFHFKPGYQYEYALIKAIVKEVTRRINRKPLHVADYPVGLEYRVQKVNSLLDVESSEGVQMVGICGTGGIGKSTIARAVCGLIVDSFEGFCFLADVRENSINHGLVYLQEILLSEMLEEDVKLRDVNQGIPIIKHRLHKKKVLLVLDDVDELKQLQAIAGGPDWFGSGSRIIVTTRDKHLLVSHGVKRIYEVDFLNREEGLELLKWHAFKQSRVDASYMDILNHAVFYACGLPLALEVIGSDLFSREINYWNSALEHSIPIKEIQQILKVSYDALEEYEQENFLGIACCFKGDSFEYVRSALFARRICPDYGVKVLIDKCLIKINHGKVTMHDLIQAMGKEILRQKSSYEPGKRTRLWLHKDILHVLEENKGSGKIEAINLDMPGDIVIDWSGNAFKRMPNLKILIIRNAQFSTGPTHLPNSLRVLDWKGYPCPSLPSDFNPKELIILKMPETFLQPDVLLNACRLIKTQLFLILSRRIPDLRELCLECCNKLIEVHVSIGFLGKLKRLSVKHCRKLKTFPSIKLTSLEFLDLSWCSSLTRFPEVRVNGTDVGFPEGQTILSSLTTPHVFLFDLRRFVLEDKLRSVVSERGWNHVEISCVLSYINCSDPMVLGKIYCISKAKWSGAYVYKQKSKMEDIRFINLCQEAVSELSKGSSMNPDSFTESVLPRMKWSDMDFKVSGDSNNNADMSLLSKPIAESHSVTGIENNIRKRDGRDLSIWVPPPLTRSLLCPSWMRNEESEGKCYAVTKK 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1415g00005 907 SMART AAA_5 215 352 IPR003593 GO:0016887
Pral1415g00005 907 Gene3D - 13 180 IPR035897 -
Pral1415g00005 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 441 IPR027417 -
Pral1415g00005 907 SMART till_3 16 156 IPR000157 GO:0007165
Pral1415g00005 907 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 159 IPR035897 -
Pral1415g00005 907 Pfam NB-ARC domain 198 430 IPR002182 GO:0043531
Pral1415g00005 907 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Pral1415g00005 907 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Pral1415g00005 907 Coils Coil 418 438 - -
Pral1415g00005 907 Gene3D - 181 345 IPR027417 -
Pral1415g00005 907 Gene3D - 351 433 IPR042197 -
Pral1415g00005 907 PRINTS Disease resistance protein signature 293 307 - -
Pral1415g00005 907 PRINTS Disease resistance protein signature 218 233 - -
Pral1415g00005 907 PRINTS Disease resistance protein signature 680 696 - -
Pral1415g00005 907 PRINTS Disease resistance protein signature 386 400 - -
Pral1415g00005 907 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 730 IPR044974 GO:0006952
Pral1415g00005 907 SUPERFAMILY "Winged helix" DNA-binding domain 419 525 IPR036390 -
Pral1415g00005 907 Pfam TIR domain 17 182 IPR000157 GO:0007165
Pral1415g00005 907 Gene3D Ribonuclease Inhibitor 540 706 IPR032675 -
Pral1415g00005 907 SUPERFAMILY L domain-like 537 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1415g00005 Pral-Chr1415 38256 42650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1415g00005 11 705 WRKY Transcription Factor Family AT4G12020 30.864 1.89e-73 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1415g00005 - - pcin:129295008 890.182