Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1414g00005 ATGTCCGTGAAGCCTTTCTCCCATTTCCCGCGGAGCAAACTTGGCGTTTCTTTCATTTACGGAGCCAATAGTGTCAATTGCAAAACCAAAACCCGGTGTTTATTTCCCTTTACCAGCTTGCAAAATGCTAATTCGAGGTCCGATAAGGGGTGGGAATGTAGGAATTTGAAAGCTTCTTGCCAATTCTTTGCTTCAGCGAATGAGAAGCAGGGCAACGTTGGTTCTGGGTTACGGAAGGCGTTTTCCTTTGCCCAGTCCATTTCACCTGGTGGTAGCTGGTGGAACTTATCTGTAAATAAGCAAGACGAGATTGCAGCGGCGAAGCCAATGACGGCACTGCTCGCTCTTCGCCGAATGTGGATTTTAATTTCCAGCGAGAAATGGATTTTACTTTTGGCGTTTGGCTCCCTTGTCGTTGCTGCCGTGTCAGAGATCTCCATGCCAAGTATATTGGCTGCGTCAATATTTTCGGCACGGAGTGGCGAGACCGTGGGGTTCTACCGGAAGGCACAGTTCTTACTTGTTCTGTGTTTCACTTCAGGCATATGCAGTGGTTTGCGAAGCGGCTGCTTTGGAATTTTAAATGTAATCCTGGTAAAGCGTCTCCGGGAAAATCTGTATGCAGCTCTTCTGTTTCAGGACATATCCTATTTTGATAGAGAGCAAGTTGGTGACTTGACAAGCAGGCTTTCAGCAGATTGTCAACGACTATCTTATGTCATAGGAAATGATCTACATTTGATATTTCGCAACACTTTACAGGGAACAGGGGCAATAATTAATTTGCTGATTTTATCATGGCCTCTGGCATTGTCTGCCTTGGTGATTTGCTCTCTTTTGTCCTCAATTTTCCTGGTTTATGGCCAGTATCAAAGAAAAGCAGCAAAGTGGACCCAAGATTTCACAGCTAGTGCCAATCAAGTAGCACAGGAAACCCTTTCACTGGTAAGAACAGTCCGAGCCTATGGCACTGAAGTAGAAGAAATTGGAAGGTACAAGCAATGGCTTCAGAGATTAGCATTTATAAACACACGAGAGAGTTTGGCTTATGGTTTTTGGAGCCTGAGTTTTAACACTCTTTATCGTTCAACTCAGGTACTTGCGGTGCTGTTAGGAGGAATGTCCGTTCTCTGTTGTCGTGTAACTGCAGAGCAGCTTACTAAGTATGTACTATACTGTGAGTGGCTGATTTTTGCTACTTGGAGGGTGACAAATAGCTTGTCATCATTCCTGCAGTCAATTGGAGCATGTGAAAAAGTTTTCCAAATGATGGATCTTTTGCCCAGTGACCAATTTTTATCCAAAGGAGTGAAGTTGCGGCGGTTAAGGGGACGTATTAATTTTGTAAATGTATCATTTTGTTATCCTACAAGGATCACGGTGCCTATTCTAGAACGCTTAAACTTCTGTGTAGAACCAAATGAAATGATTGCAATAGTTGGTCTTAGTGGTAGCGGAAAGAGCACATTACTCAATCTTTTACTTCGTTTATATGAGCCGAGTAATGGTCAGATTTACATTGATGGGTTCCCTCTCGGAGAATTGGATATCAGGTGGCTGAGACAAAACATTGGCTACATAGCACAGGAACCGCATCTCTTTCACATGGACATCAAGTCAAATATAAAATACGGTTGCCCTAGGGACATTAAACAGGAAGATATTGAACGAGCAGCAAAGCAGGCCTATGCTCATGACTTCATTTCATTGTTTCCCAACGGCTATGAAACCATTGTTGATGATAATTCACTCAGCGGGGGACAAAAGCAACGAATTGCCATTGCTAGGGCCATTCTTAGAGACCCTGTTATTATGATACTGGATGAAGCAACCAGTGCTCTAGATTCTGAGAGTGAGCATTATATCAAGGAGGTTTTATATCCATTGAGAGGGGGAACTAAAGAAAGAACCACCATTGTCATAGCACATAGGCTTTCTACCCTAAAAGCTGCTGACAGGATCTTCGTAATGGATGATGGTCGCATCATTGAGATGGGTAACCACGAAGAACTTCTGCTTAAAGGTGGGCTCTACGCAAAATTGTATAAAGTTCAAACAGATATTTTGACCTAA 2073 0.4313 MSVKPFSHFPRSKLGVSFIYGANSVNCKTKTRCLFPFTSLQNANSRSDKGWECRNLKASCQFFASANEKQGNVGSGLRKAFSFAQSISPGGSWWNLSVNKQDEIAAAKPMTALLALRRMWILISSEKWILLLAFGSLVVAAVSEISMPSILAASIFSARSGETVGFYRKAQFLLVLCFTSGICSGLRSGCFGILNVILVKRLRENLYAALLFQDISYFDREQVGDLTSRLSADCQRLSYVIGNDLHLIFRNTLQGTGAIINLLILSWPLALSALVICSLLSSIFLVYGQYQRKAAKWTQDFTASANQVAQETLSLVRTVRAYGTEVEEIGRYKQWLQRLAFINTRESLAYGFWSLSFNTLYRSTQVLAVLLGGMSVLCCRVTAEQLTKYVLYCEWLIFATWRVTNSLSSFLQSIGACEKVFQMMDLLPSDQFLSKGVKLRRLRGRINFVNVSFCYPTRITVPILERLNFCVEPNEMIAIVGLSGSGKSTLLNLLLRLYEPSNGQIYIDGFPLGELDIRWLRQNIGYIAQEPHLFHMDIKSNIKYGCPRDIKQEDIERAAKQAYAHDFISLFPNGYETIVDDNSLSGGQKQRIAIARAILRDPVIMILDEATSALDSESEHYIKEVLYPLRGGTKERTTIVIAHRLSTLKAADRIFVMDDGRIIEMGNHEELLLKGGLYAKLYKVQTDILT 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1414g00005 690 SUPERFAMILY ABC transporter transmembrane region 117 430 IPR036640 GO:0005524|GO:0016020
Pral1414g00005 690 Pfam ABC transporter 464 612 IPR003439 GO:0005524
Pral1414g00005 690 Gene3D ABC transporter type 1, transmembrane domain 111 430 IPR036640 GO:0005524|GO:0016020
Pral1414g00005 690 Pfam ABC transporter transmembrane region 131 392 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1414g00005 690 FunFam Multidrug ABC transporter ATP-binding protein 438 688 - -
Pral1414g00005 690 Gene3D - 436 688 IPR027417 -
Pral1414g00005 690 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 446 684 IPR003439 GO:0005524
Pral1414g00005 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 437 685 IPR027417 -
Pral1414g00005 690 ProSitePatterns ABC transporters family signature. 584 598 IPR017871 GO:0005524|GO:0016887
Pral1414g00005 690 PANTHER ABC TRANSPORTER B FAMILY 106 683 IPR039421 -
Pral1414g00005 690 SMART AAA_5 473 661 IPR003593 GO:0016887
Pral1414g00005 690 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 131 412 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1414g00005 690 CDD ABC_6TM_TAP 133 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1414g00005 Pral-Chr1414 18394 26074 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1414g00005 201 685 Calmodulin-binding Proteins AT2G36910 35.882 5.04e-75 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1414g00005 - - pcin:129294067 1174.07