Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1414g00002 ATGCGAGGTCCTTTGGCCACAGAGAAGAGGAGGAGGATAAGTCTCAGCCTCTTACCGGTGATGGGGCGAGTCCCGGCTCAATTTGTTAAGCACTTTGGTAAATATGGCGAGATCACGGACTCTGTAATAATGAAGGACAGGAAGACTGGGCAACCGCGTGGATTTGGTTTTATAACTTATGCAGATCCCTCTGTGGTAGATAAGGTCATCGAGGATACTCATGTTATCAATGGCAAACAAGTGGAAATTAAACGTACAATACCAAGAGGAGCTGTTGGCTCCAAGGATTTCAGGACAAAGAAAATTTTTGTGGGTGGAATTCCCTCAACCGTGACTGAAGACGAGTTTAGAGACTTCTTTACTCACTATGGAGAGGTCAAAGATCACCAAATAATGCGAGATCATTCCACCAATCGTTCACGTGGCTTTGGTTTTATTACTTTTGACTCTGAGGAAGCTGTTGAAGATCTCCTGTCTAAGGGGAACAAAATAGAGTTTGCTGGGGCTCAGGTGGAAATAAAGAAGGCTGAGCCAAAGAAACCAAACCCACCGCCGGCCTCCTCCAAGCGCTATAATGAGTCAAGATCTTCATTTGGTGGTGGGTACGGAGATGCTTATGATGGATTTGGTGGTGGCTTTGGTGTTGGGGGATATAGGTCAGGTGGTGTCTATGGTGGTAGGGGTGGTTCCTATGGTGGCTATGGTGGTGAATTTGGTGGGTATGGAGGATATGCTGGGGCTATGGGACCTTATAGAGGAGATCCCACCCTTGGGTACTCCGGTCGATATGGAGGCGGGTTTAGCAGAGGTTATGACCTTGGAGGATATGGTGGACCTAGTGATAGTTATGGGGGATACGGTGGTGTTGGTTCTTCAGGTAGTGCTTATGGAAGTGGCTATGATGCCAGCTTGGGGGGCGGATATGGCAGTGGTGGCGGTGGTGGTGTTGGAGGTTCCTTTTATGGGAGTAGAGGTGGATATGGTGGTGCAGGGTCTGGTCGATACCATCCCTACGGAAGATAG 1023 0.4848 MRGPLATEKRRRISLSLLPVMGRVPAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTHYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVEDLLSKGNKIEFAGAQVEIKKAEPKKPNPPPASSKRYNESRSSFGGGYGDAYDGFGGGFGVGGYRSGGVYGGRGGSYGGYGGEFGGYGGYAGAMGPYRGDPTLGYSGRYGGGFSRGYDLGGYGGPSDSYGGYGGVGSSGSAYGSGYDASLGGGYGSGGGGGVGGSFYGSRGGYGGAGSGRYHPYGR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1414g00002 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 81 IPR000504 GO:0003723
Pral1414g00002 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pral1414g00002 340 MobiDBLite consensus disorder prediction 174 195 - -
Pral1414g00002 340 SMART rrm1_1 101 174 IPR000504 GO:0003723
Pral1414g00002 340 SMART rrm1_1 12 84 IPR000504 GO:0003723
Pral1414g00002 340 FunFam - 24 86 - -
Pral1414g00002 340 FunFam Heterogeneous nuclear ribonucleoprotein 1 91 213 - -
Pral1414g00002 340 Gene3D - 24 91 IPR012677 -
Pral1414g00002 340 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 26 340 - -
Pral1414g00002 340 SUPERFAMILY RNA-binding domain, RBD 96 208 IPR035979 GO:0003676
Pral1414g00002 340 SUPERFAMILY RNA-binding domain, RBD 28 90 IPR035979 GO:0003676
Pral1414g00002 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 88 IPR000504 GO:0003723
Pral1414g00002 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Pral1414g00002 340 Gene3D - 93 208 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1414g00002 Pral-Chr1414 4906 8304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1414g00002 32 212 Eukaryotic Initiation Factors Gene Family AT2G23350 25.500 8.59e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1414g00002 K12741 K14314 gmx:100813165 339.732