Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1413g00004 ATGTCTAATCAAACTACTCTTCAAGGAGGGCCATCAATATTTGAAATTGATCAACGTACAAATCTTGGACGTGAAGTAATTCGAGCTCTGCTTTTGGAAGGTCAAGGTGATGAACTTACGATCTATGTCTCAAGAAGCCGATTTGAATACATGTTTGGAGAAGTAGAAGGAGGAGAAGGGGAAGACGAGGACGACGATGAAGAAATAGCAGACGAAGACAATGGCGGCGGCGAAAATCATCAAAGGTCAGTAGAAAATTTAGAGAAGGTCGAGATTCAAGAGTCTATAATGTGCTCGATATGTCTGGATGGGATTACTCCGTCGAGTGAAACAGACGAAGAAGAAGAAGACAAAGGAGCAGTTGGAATTCCCTGTGGTCATGTGTACCACCACAAGTGTATCTTCAAGTGGCTCCTCAAGCAGCAAACTTGCCCTTTGTGTCGCTACAAGATTACAAGCTAA 462 0.4307 MSNQTTLQGGPSIFEIDQRTNLGREVIRALLLEGQGDELTIYVSRSRFEYMFGEVEGGEGEDEDDDEEIADEDNGGGENHQRSVENLEKVEIQESIMCSICLDGITPSSETDEEEEDKGAVGIPCGHVYHHKCIFKWLLKQQTCPLCRYKITS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1413g00004 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 79 150 - -
Pral1413g00004 153 MobiDBLite consensus disorder prediction 53 83 - -
Pral1413g00004 153 SUPERFAMILY RING/U-box 84 152 - -
Pral1413g00004 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 153 IPR013083 -
Pral1413g00004 153 ProSiteProfiles Zinc finger RING-type profile. 98 148 IPR001841 -
Pral1413g00004 153 MobiDBLite consensus disorder prediction 55 73 - -
Pral1413g00004 153 SMART ring_2 98 147 IPR001841 -
Pral1413g00004 153 Pfam RING-H2 zinc finger domain 97 148 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1413g00004 Pral-Chr1413 25164 25625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1413g00004 84 151 C3H Transcription Factor Family AT1G14200 38.667 3.92e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1413g00004 - K22378 pcin:129316560 66.2402