Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1404g00004 ATGGAGTACGGGAGTGGAGGCGGTGGTGGGTCCCCCGGGGACCACCATCACCACCACCACCACCTGCTGCACGACGGTTCTGATTCACAGAGGAACAAGAAGCGATACCATCGTCACACAGCTAACCAGATTCAGAGGCTTGAATCAATGTTCAAGGAGTGCCCCCACCCAGATGAAAAGCAGAGATTGCAGTTAAGCAGGGAACTAGGCTTGGCCCCTAGGCAGATCAAGTTCTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAGAGGGCTGATAACTGTGCCCTTAGAGCAGAGAATGACAAGATTCGATGCGAGAACATAGCTATCAGAGAGGCCCTCAAAAATGTCATTTGCCCTTCTTGTGGTGGCCCTCCTCTTCACGAGGATTCCTATTTCGACGAGCAAAAGTTGCGTTTGGAGAATGCTCAATTGAAAGAAGAGCTCGATAGAGTATCTAGCATTGCGGCTAAATACATAGGAAGACCGATTTCTCAGCTCCCTCCTGTGCAGCCTATTCATATTTCATCTCTGGACTTGTCGATGGCAAGTTTTGGGAGCCAGACTATGATGGGTGGTCCCTCCCTTGATCTCGATCTTCTGCCTGGGAGTTCTTCATCGGTTCCGAGCTTGCCTTATCAGGCGGCCTCATTTTCCGACGTCGACAAGTCCCTCATGTCTGACATTGCTGGAAATGCTATGGATGAGTTGCTCAGGCTTTTGCAGACTAATGAACCCTTGTGGATGAAGTCAGGCACGGATGGGAGAGATGTTCTTAATCTTGACGCTTACGGAAGCATGTTTCCCAGATCGAGTAGTCACCTCAAGAACCCCAATGTTCGGGTCGAAGCGTCTCGAGATTCTGGAGTTGTGATTATGAATAGCTTGGCTTTGGTCGACATGTTTATGGACCCTAACAAGTGGATGGAGCTATTTCCCACCATAGTCTCGATGGCATCAACGATTAAAGTGATATCTTCTGGAGTGCTCGGTGGTCATAACGGCGCTTTGCAATTGATGTATGGAGAGCTTCAAGTGCTTTCTCCACTGGTTCCAACCCGAGAGTTCTATTTTCTGCGATACTGTCAGCAAATTGAGCAAGGCTCATGGGCGATTGTGGATGTTTCTTATGATTTTCCTCAAGACAACCAGTTTGCTCCTCAATTTCGGTCTCATCGATTCCCTTCTGGCTGCTTGATCCAGGATATGCCTAATGGGTATGCTAAGGTGACTTGGGTTGAACACGTAGAGATTGAAGATAAAACACCAATTCATCGTCTTTATAGAAACCTTATTTACAGTGGTTTGGCATTCGGAGCAGAAAGGTGGCTTGCTACACTTCAAAGAATGTGTGAAAGATTCGCTTGTTTAATGGTTACTAGCAATTCAACTCGTGATCTTGGAGGAGTGATTCCCTCACCGGAAGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCAATTTCTGCACAAGCATCAGTGCATCTAACGGCCATAGATGGACTACGCTTTCTGGGTTTAACGACATCGGCGTCAGAGTCACCGTCCATAAGAGCTCCGATCCCGGCCAACCAAACGGCGTCGTTCTCAGTGCAGCCACCACCATCTGCCCCATTCCGCCCCAGACCGTTTTCAATTTCTTCAAGGACGAAAGGAAAAGACCTCAGTGGGATGTTCTTTCGAACGGGAATGCTGTGCAAGAGGTTGCTCATATAGCCAATGGGTCTCACCCTGGGAACTGCATATCTGTTCTTCGAGCTTTCAACACGAGTCAAACAAACATGTTGATACTGCAAGAGAGCTGTGTGGACTCATCAGGATCCCTCGTGGTGTACTGTCCGGTGGATCTTCCGGCAATCAACATCGCGATGAGCGGCGAGGACCCATCGTACATCCCGCTGCTTCCGTCGGGGTTCACGGTGTGTCCGGACGGGCAGGTGGAGCAAGGCGGAGGAGACGGAGCGTCAAGCAGCTCAAGCACAGGAAGGAGATCAGGTGGTGGGTCACTGATCACGGTGGCGTTTCAGATTCTGGTGAGCAGCCTGCCATCTGCGAAGCTGAACTTGGAGTCAGTGACGACCGTTAATAACCTCATCGGCACCACTGTGCAGCAAATTAAAGCAGCCTTGAATTGTCCTAGTTCCTGA 2163 0.4979 MEYGSGGGGGSPGDHHHHHHHLLHDGSDSQRNKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPLHEDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMASFGSQTMMGGPSLDLDLLPGSSSSVPSLPYQAASFSDVDKSLMSDIAGNAMDELLRLLQTNEPLWMKSGTDGRDVLNLDAYGSMFPRSSSHLKNPNVRVEASRDSGVVIMNSLALVDMFMDPNKWMELFPTIVSMASTIKVISSGVLGGHNGALQLMYGELQVLSPLVPTREFYFLRYCQQIEQGSWAIVDVSYDFPQDNQFAPQFRSHRFPSGCLIQDMPNGYAKVTWVEHVEIEDKTPIHRLYRNLIYSGLAFGAERWLATLQRMCERFACLMVTSNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCTSISASNGHRWTTLSGFNDIGVRVTVHKSSDPGQPNGVVLSAATTIWXPIPPQTVFNFFKDERKRPQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQTNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTVCPDGQVEQGGGDGASSSSSTGRRSGGGSLITVAFQILVSSLPSAKLNLESVTTVNNLIGTTVQQIKAALNCPSS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1404g00004 721 SUPERFAMILY Bet v1-like 223 457 - -
Pral1404g00004 721 ProSiteProfiles START domain profile. 222 459 IPR002913 GO:0008289
Pral1404g00004 721 SMART START_1 231 456 IPR002913 GO:0008289
Pral1404g00004 721 MobiDBLite consensus disorder prediction 1 41 - -
Pral1404g00004 721 SMART HOX_1 32 94 IPR001356 GO:0003677
Pral1404g00004 721 FunFam Homeobox-leucine zipper protein GLABRA 2 231 455 - -
Pral1404g00004 721 Pfam Homeodomain 33 88 IPR001356 GO:0003677
Pral1404g00004 721 SUPERFAMILY Homeodomain-like 12 90 IPR009057 -
Pral1404g00004 721 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Pral1404g00004 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 31 717 IPR042160 -
Pral1404g00004 721 Gene3D - 230 455 IPR023393 -
Pral1404g00004 721 Pfam START domain 232 456 IPR002913 GO:0008289
Pral1404g00004 721 MobiDBLite consensus disorder prediction 649 670 - -
Pral1404g00004 721 FunFam Homeobox-leucine zipper protein HDG1 20 106 - -
Pral1404g00004 721 Coils Coil 138 158 - -
Pral1404g00004 721 CDD START_ArGLABRA2_like 226 455 - -
Pral1404g00004 721 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Pral1404g00004 721 SUPERFAMILY Bet v1-like 477 713 - -
Pral1404g00004 721 CDD homeodomain 33 91 IPR001356 GO:0003677
Pral1404g00004 721 Gene3D - 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1404g00004 Pral-Chr1404 66159 69322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1404g00004 28 721 Homeobox Transcription Factor Family AT1G73360 68.750 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral1404g00004 START 7e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1404g00004 K09338 - gmx:100809075 1188.71